RNA id: XM_036936531.1


Basic Information

Item Value
RNA id XM_036936531.1
length 1312
RNA type mRNA
GC content 0.43
exon number 4
gene id malsu1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6908511 ~ 6911256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGTCCTGGAATCAGAAACACTTCCTGTTTCTAGACAGCCCTTGGAAAAACAAACCAAAATTACTTGCGTTTTAATGGCAATGACACGATAGCTAAATCATGTATGTACTACATTGTTCTAGGCTATTTGTCTCTCAGATACTTTCACATAATGTTCTTCGAGGGTATACTGGTGTCGTTAGAGGTGCGTGTTTAATTTCAAAAGCGCGACGCAGCACAGCATTTTTGTATCGACGTTACACATGTCTTGCCTCTCAACAATTGCATCCACATCTATCTGTATTTTACAACGGTATTAGACGATATTTCGCCGATTTACATGCTGAAGAGAATGTTTTAAAGTCGGACACCCCTGGCAAGCTTCTGGCACAACAAGATGAATATGAGATGCAGAGTGACTCAAACCAAAGAAACCCACAGGAGGACTTTAACCTCGACGTGTTGGTGTCCCTGCTCCGCCAGGAGAATGCAGCAGACATCTGTGTCATCAAGGTGCCTGAGGACATCAAGTACACAGACTACTTCATCGTTGTCAGCGGCTCCTCCTCAAGACACCTCCGTGCCATGGCCCTCTACGCCATTAAAGTGTACAAATATATGAAGAAAGACCGGGACCCACATGCCAAGATTGAGGGAAAGGATGCAGAAGACTGGATGTGCATTGACTTTGGAAGGATGGTGGTCCACTTCATGCTACCAGAGACCAGAGAGGTGTATGAACTGGAGAAGCTGTGGACACTACGTTCTCTTGATGAACAGTTGAGCTCCATCCCTGTTGAGACGCTCCCAGAGGACTTCATATATGGAGCCGATGTCACCAAGTGACTCAACAATTAAAGAACTGTTGAAACTGGAGTGTTATTTATTGAAAAGAAGAGACACTTCTGGAGTCTgcttcctaaatggcaccctattccctttatagtgcactacttttgaccggagtcctatgggtcctggtcaaaagtagtgcactatgtagagaaaaGCAGTGTACCATTTGGGGCTGATTCCAAATGTTGAAAACTGCCATTACTGGTTGAATTCAGCCTGTAAATTGAAGTTGTCCTCTAAGCTTTGATCTTTGTTACCATTATAAACCAGTCTGCTATGCAGACTAGATGACACAAGAAGTGTCTTACAATCATGGTTGTTAGTGTTTGCACTGGAATGTAGCTAGGGGTTTagggtgtttttgtgtgttttgagATGTATTGATGCGATGGGGAGGGGGATTCAGTGACAATGGTTGTTTGGGCATCAGAAGACTGAATTTTATTAAAGAATTAATTTAATAAAATCCTTTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125028 lncRNA upstream 3656 6903970 ~ 6904855 (+) True G109739
TU125027 lncRNA upstream 11841 6896423 ~ 6896670 (+) True G109738
TU124164 lncRNA upstream 28955 6879274 ~ 6879556 (+) True G109092
TU124160 lncRNA upstream 36784 6871511 ~ 6871727 (+) True G109088
TU124136 lncRNA upstream 37566 6869600 ~ 6870945 (+) False G109069
TU125043 lncRNA downstream 17449 6928705 ~ 6929195 (+) True G109748
TU125056 lncRNA downstream 57785 6969041 ~ 6969918 (+) False G109757
TU125057 lncRNA downstream 57785 6969041 ~ 6969474 (+) True G109757
TU125058 lncRNA downstream 60530 6971786 ~ 6972075 (+) True G109758
TU125066 lncRNA downstream 85961 6997217 ~ 7090223 (+) True G109764
XM_036936521.1 mRNA upstream 311 6897498 ~ 6908200 (+) False smpd5
XM_036936518.1 mRNA upstream 311 6897502 ~ 6908200 (+) False smpd5
XM_036936511.1 mRNA upstream 311 6897503 ~ 6908200 (+) True smpd5
XM_036936493.1 mRNA upstream 12224 6891585 ~ 6896287 (+) True LOC118937417
XM_036936501.1 mRNA upstream 12984 6891448 ~ 6895527 (+) False LOC118937417
XM_036936541.1 mRNA downstream 833 6912089 ~ 6938750 (+) False stk31
XM_036936548.1 mRNA downstream 834 6912090 ~ 6938750 (+) True stk31
XM_021620021.2 mRNA downstream 30209 6941465 ~ 6944043 (+) False LOC110535156
XM_036936652.1 mRNA downstream 30219 6941475 ~ 6944043 (+) False LOC110535156
XM_036936643.1 mRNA downstream 33009 6944265 ~ 6991768 (+) False mpp6a
TU124135 other upstream 39535 6856086 ~ 6868976 (+) True rbm24b
TU124060 other upstream 274598 6633078 ~ 6633913 (+) False G109020
TU125022 other downstream 30260 6941516 ~ 6943083 (+) True LOC110535156
TU125129 other downstream 223991 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 223991 7135247 ~ 7140979 (+) False G109821
TU125259 other downstream 391772 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 704703 7615959 ~ 7696242 (+) False creb5b

Expression Profile