RNA id: XM_036936541.1


Basic Information

Item Value
RNA id XM_036936541.1
length 5559
RNA type mRNA
GC content 0.48
exon number 27
gene id stk31
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6912089 ~ 6938750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttactgctctaattacgttggtaaccagtttataatagcaataaggcacctcgggagtTTGTTGTATATGGCTACTATACCACGGCtacgggctgtatccaggcactccgcgttgcgtcaggtttaagaacagcccttggccgtggtatattggcaatataccacaccccctcgtccTTATCGCTTTAATATGTACTACACATTATTTACACCTGCTAAGAGACCCACTGTAGAGTATCACAGAAAAAAATGTGTCTTCGAGGGGCCGGTTTTTCCATGAACCGCTTGACCTCAGCATGAGGTTTACAGAAGACCCATATCAAGATCCAAACAGCCAATCAACCTATAAACATAGACCAATGAATGATGGACGGTGAGAATATGGAGCTTGTTGGTGTAACACACGTTTTGGACGCCATTACGTTTTGGGCACAGAATGTCAAGGACGATCAAGCCATTGAAAACATAAGAAAAGCCTTGGCAGACAAATGCCCCACAGCCCCAAGGGTACTTGGAAGTCCCAATCCTCAGAAGATTTATGGGGCAGTCTTCTCTGAGGACAGCTGTTGGTACAGGTGCAAGGTTCTGCAGCAGACTGATAATTTTCACGTGTCCTACATTGACTATGGGAACACAGAGTTAGTCAGTCGGTCAGCTCTGGTGGAGCTGCCAGGGGATCTACAGGCACCTTGTCTGGCCAAGAAGTACAAGTTCCAGGGCTTCAGTGTGTCCACTGACCAAGACTCAGCACATTTCCTGCAGGGAAAGGCCTTCCTTCAGAATCTGATCTATGGGAAGAAGGTCCGTATCCAGAAGAAGTCTGTCTGCTTGGACGGGACCGTCCTGGTCCAGGCCTTTCAGGGAAACCTGGACATCGGTGAAGAGGTTTTGAAGATGAAGTTCGCCAAGTTCACCCTCCCGGGGAGTAACCGTGAGGGCCCCATGTCTGTGCGGGCCCTGCAGGAGTCCCATTGCCCGTGGCCTCAGCGGGTGTTGGATTGGCCTAGCCCCCAGGGGGATGGGGACATGCCTGGCTCTACAGTCTGCATGCCCAAACTACGGCCTGCTTTCCCCGACCAGAGTCCCCTTTCAATGAAGGAGAAGAGCAAGGCCACAGCCCAGCATGCTGCCAACCTAATGAAGAAGATGGACCAGGAGCTGGTGGAGGAGAACCAGAGGCTGAAGGCAGAACGAGAGACCCAGCGCAGGGAGGACCAGCTGAGAGACAGCCTCTCAGAGCTCCAGAAGTTGAAAGAGGAGACTGTTAATTATGCtaaagaggcagagagatggaaggtggaGAGGAACACACTCCAGAACCAATCAGAGCAGCTGGAGAAACACCTGCAAGTTGCCAAACAGGAAGTGCAGGGTCCTAAGTTTGGAAGGGACATGGTAGTGCAGGCTATGAGGGGACAGTTAAAGAAGAAGGAGAAGCAAGTGGATAAGCTCCTGGACTCAGCGGTGGCTGAACGGTTCTGTCGACTGGCTGAGAGAGTCGATTCTCTGAGAGGATTAAGagagagaaacccagGTAACACGGATAGCGACAAGCTTACGGAGTCTATCAACATTGTCATAAACAACAGCATCTCTGCCCCGGTTGCCATGGAGAAGCTGGAGTCGGCATGGAGAGATTACAGCCTGGCTCAGGAGAAACTCAAGGCCTGTCAGACGAAGGAGCAGCTTGGGGATCTGATAGACAACCGGAATAAGGTGCGAGGTGTTCTGACTGCCACTGTAGAGTCCTTCCTTCAGGAGGCTGAGTGTTTGCCAGTCAGACAACGCATGGACAAACTGGAGGAGGTGAGCTCCTCCCTGACTGCAGTGTTTGGTCCAGCCTCTATGGAGGGTGATGTTGGAGAGCAGGCCTTTGAGCAGTACTGCCagtggaggactcagaggagtcagctcaccagctctgtcagagacGGGACGGACAAGGCCCTCCAGGCCCTGTGTACCTGGTCGGAGAACGTTGGCAAGTTTTTCTGCCTGTCAGCTAACACAGTGGTGGGAGTGAATGACATCGTGGACGGAGTGAATGAGCTGCTGAAGCAGGCAGAGAACAACGTGGCCAAGGAGCTGGACTCTCCCCTGTCAGTCGGGGAGCAGAACAACCATGAGACCAAGGCAGTGTCCAACGCTTTCCACAAAGTCATGCAGCACATTCAGAGTGAGCAGAGTCTGCTGAGTGACATTATGGAGAAATATCTGCTCAACACCAAGTTTAAGGGTGAGATGCTACAGTGGCAGAATACTAGCCCGACTCCAGactctctgttctctgtgaagAAACGTATCCGCAGCCTGAGGGCTCAGCTGaggtggagacaggtggaggaggccAGTCTGGAGGAGGCTGAAGACTTTGACCTAACGGAGATTCTGAAGAAGAAGGAAGAGATTGCTGAGACCAGAAACACTCTTTTCCATGAAATCGGTCAAGAAAGAAAAGAATATATGAAGCTCAGTGCTCTGGCTGAAGGCTGCTGTCCTGAGCTCCCCCTGCTCTACCCTGAGGCAGACATCCACAGCCACATGagctcTGGAGGTCTGGTGGTGAAGAGTCTGGACAGGGACATGTTTGACGCTGAGCCCATGAAGGAGCTGAGTGGACGCAGGCCTCTGGTCTGTACTGAGTTCCAGGGACAGAGGGTCATACTCAAGGGTTACACTGTGAATGAGGAGGCAGAGGCCAGAGTGTTGGAGAGAACCACCCAGTTTCACAGAACCAGGACTCAGCGGGAGAGTCAGACTGACACTGGAATACTCCCTCTTCTGGCACTGTTCTTTGGCAAGTCAGACCCTCTTGCCTATGTGATGGTGCCATACTTCCCCAATGGAAGTCTCTGGGCTGTTCAGGCTGCCAAACCCCTAACAACCTCAgAGACTGTGAAGGTGATGAGAGGCGTGGCCAGGGGCCTCCAGGCCCTCCACGCTGCAGGTGTCACCCATGCCTCCCTCAACCCCAACAACGTCTTCGTCCTCCACCGACACCAAGGCATGGTGGGAGACTACGACTTCATAAAGACTCCTGTACAGAGGGCAGTGGACAGTGGGATGGTGGCCGGCTCTATCAGCCTGGTTGCCCCAGAGCTCCGTCAGACACAAGGCACACCTCCTACTCCAGCCTGTGACATGTACTCCTACGGCTGCCTGCTGTTCTGGCTGCATGCCCCAGGGTTCAACGGGGATCTGGATAGTGGCAGCAGACTGGCCCTGGATATCAGCGGAGTGAAACTGGAGGACAAACTCCAAGCCCTGCTGTCTAAGCTGCTGGTGTGTGTTGGAAGACTGACTGCTGCTGAGACCCTGGCTGATGACTACTTCCTGTCTGACCAGTAACCAGGCAACTGGTACATACTGGGATAGTTTGGTTGACAGTTTTACTTTAATACTAGCCTGGGTAGCCTTGGTAATGtctgtttagctaacattccactccgtGACATGCCAAATATGGTTTACCAGTACCCAGACTACTTCAATACTACAATGTTTTGTTGATCTCCCAATATAAAAGCACAATATATTTGTCAGTCTGCTGATTTAAAAGCACAGAATCATGTTTAGCTGTATATTATTTTCCTTTTTAAATGTTCTGTTCAGTAACTAGGTGATGTTGGAGTACCCTGTCTTGCAGTTGTCACTTTCTAGAGGAAATAAAAGACACGTTCTGAGATGGACCTGATCTTTATGGACCTGGTCTGTATGGACCTGGTCTGTATGGACCTGGTCTGTATGGACCTGATCTGTATGGACCTGATCTGTATGGACCTGGTCTCATTTAGAACTCAAAGGGAACCACCACCAGCACAATGCTTTCGGTTCTAAGACATTAGTTAGAGTTTTTGCTGCTGTGTACTCTTTAACACTAGTTCTGTGCTCTGTTGCTGACTGTCTCCTGACTTGCCTGATTGGGATGTtgtcagcatcaatctactgtaAAATCTCTGAAAATCCCTTGGAAAACGCTCCCCTGAGAAAATTGTTATCATTACATGTTTTCTCACCCTTCACTGGTTGAAAACTATGGTCAGATTTTTGTGCCCCCTACGTGCCCCTATTTTACAGAACTGCGGGTTGATGGTTTTGCACTCTCTCTAAATGTCCTTTGATTTGGAGAGATTCATTAGAAGTTGggctttttttgttgtttattttccATCTGTAAAAACACAATGTTCATATTGTATTTTTGTCTCATTCTCATCATTTAATTTCATATCCTCATTTAATTTCATATCCTCATCATTTAATTTCATATCCTCATCATTTAATTTCATATCCTCATCATTTAATTTCATATCCAAACTGCTGGAGTAAAAATACTAAAGATGTTTTGCTTCAATGCCTCATTACATATGGAGCCAGATGTGTATATGGGCTTGTCCTTATCTGGGGATGACTTCCTTAATCTTTGTTGTTCTGATGTGGAACATCAGGCTTCCATGAGAGAGGACTACTGCTGCCCATCTTCTGCCTGTCTGGGAATGGTTACTTCCTTAATCCTTGTTGTTCTGATGTGGAACATCAGGCTTCCATGAGAGAGGACTACTGCTGCCCATCTTCTGCCTGTCTGGGAGGGTTTTCCATGACAGTTAATGGCTCATCAATTTGGGGAGGATCTGTAAGAGTGGTGTCACTGGTTGGAGAATGACCTGTCTGCATTAGGGCTTGTGAGAGATTTATCCAGAGGTCTTCTTTTCCTTCAGGACTGGTGGTGGTCTATCCTTTGAGGAGACTTGCCTTGAAATTGATAGATCAATTATTCATGAGAAATAATGGCTGTCCATTGGGAGTGGTTCTTTACAAAACCTTACCTAACTATAATTTGATTCCCTTTTGCCTAGTGGGTGGCTGTTTGAATCTTATGTGGTAGAAGTCGCTATTTTACATATGGTCAACTTTGAACTTGTCCCAAGTAATGGCTGTTacagtttagcagatgctcttatccagagcaattaggattaagttccttgctcaagggtacatcgaCAGATTCTTCACCTAGTCTGCTTAGAGATTCGAAATCCAGCGAtctttcgggttactggcccaatgctcttaaccgctaggctacctgctgccctgttGGTTTATGTTGGAGTCTCAGGACGTTGTTGTGATTCAGTGTTTGGAAGAGGCACTATCCCCCTGAAAGATGCATCGTTCTAATAAACTTCACTTTGTAATGGGAAGGGGCTGATGGAGGAAGATGAACAGACAGTTCAGGTAAACACCACTTTTTACTGTTAGGACTTGTCTGCCTGTTTTAAAATACACTTCTCGTCCCCTTTTAGTGTTTTAAACTAACATAAATAAATTCTCATACACCAGAACCACTGGGACATATTGTTCATAAACACGTTTTAATGCAAAATGAACAAATCAACCATCAGTCGATTCAAGATGAGCATCAGCGGTTTTCTAGTGGAAAAACCATTGAAGAGCTTGTCAGGCAAGCAGTTATCTCAAAGTGGGCACTCTTTTTAAATGAAACGTTAAAACTATAAATCCTCTTCAAGCCATTGTCCCTGCCTGGACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125028 lncRNA upstream 7234 6903970 ~ 6904855 (+) True G109739
TU125027 lncRNA upstream 15419 6896423 ~ 6896670 (+) True G109738
TU124164 lncRNA upstream 32533 6879274 ~ 6879556 (+) True G109092
TU124160 lncRNA upstream 40362 6871511 ~ 6871727 (+) True G109088
TU124138 lncRNA upstream 41144 6869600 ~ 6870945 (+) True G109069
TU125056 lncRNA downstream 30291 6969041 ~ 6969918 (+) False G109757
TU125057 lncRNA downstream 30291 6969041 ~ 6969474 (+) True G109757
TU125058 lncRNA downstream 33036 6971786 ~ 6972075 (+) True G109758
TU125066 lncRNA downstream 58467 6997217 ~ 7090223 (+) True G109764
TU125074 lncRNA downstream 60128 6998878 ~ 6999180 (+) False G109772
XM_036936531.1 mRNA upstream 833 6908511 ~ 6911256 (+) False malsu1
XM_036936521.1 mRNA upstream 3889 6897498 ~ 6908200 (+) False smpd5
XM_036936518.1 mRNA upstream 3889 6897502 ~ 6908200 (+) False smpd5
XM_036936511.1 mRNA upstream 3889 6897503 ~ 6908200 (+) True smpd5
XM_036936493.1 mRNA upstream 15802 6891585 ~ 6896287 (+) True LOC118937417
XM_021620021.2 mRNA downstream 2715 6941465 ~ 6944043 (+) False LOC110535156
XM_036936652.1 mRNA downstream 2725 6941475 ~ 6944043 (+) False LOC110535156
XM_036936643.1 mRNA downstream 5515 6944265 ~ 6991768 (+) False mpp6a
XM_036936640.1 mRNA downstream 5515 6944265 ~ 6991786 (+) False mpp6a
XM_036936557.1 mRNA downstream 5515 6944265 ~ 6994715 (+) False mpp6a
TU125016 other upstream 884 6908547 ~ 6911205 (+) True malsu1
TU124135 other upstream 43113 6856086 ~ 6868976 (+) True rbm24b
TU124060 other upstream 278176 6633078 ~ 6633913 (+) False G109020
TU125022 other downstream 2766 6941516 ~ 6943083 (+) True LOC110535156
TU125129 other downstream 196497 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 196497 7135247 ~ 7140979 (+) False G109821
TU125259 other downstream 364278 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 677209 7615959 ~ 7696242 (+) False creb5b

Expression Profile