RNA id: XM_036936616.1


Basic Information

Item Value
RNA id XM_036936616.1
length 5698
RNA type mRNA
GC content 0.48
exon number 15
gene id mpp6a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6944265 ~ 6994715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGAGACCCAGATGATCATAGTCGATGTCAAATGCAGAATCTATAATTTATGAAATAATTACTCCTATTGAAAACTATATGAACAGAAAAGAGCAAGTCTGAAGTTCTCACACCGATATCTGTAGTACGTTAAACGAGTGGGTGGGAACTACATTAACTAGCTCCTCGTCTCTAAAGTGGACTTCGAGATCAAGCGTCATTCGGCGGCATGTCTCCAGGACAGGAGTCGACTGTTGCGCGCAAGGAAAAGTAGCCTCGTCTGGGGTGCAGGGAATCTATGGAGACTTGAAAGTCTGACTGAAGGACACGGAGAACGTCAGGTTCTTCTGTGTTgccacaggcaggcaggccaccAGATGACTGGTGTGTACTGGGAGTAGGGCTTTCAGCCGCTGCGCTGCGTTGGAGCACAATTCACAGCCATGCAGCAGGTGCTGGATAACCTGAGAGACATGCCTCCCACCACGGGGGCCAAAGACATCGACCTCCTCTTCCTCAAGGGAATCATAGAGAGCCCCATAGTCCGCTCCCTCGCCAAGGCCCATGAGAGGCTGGCGGATGTGAAGCTGGAGGCTGTGAGAGACAACAACCAGCAGCTGGTCTCAGAGATCCTAGACTCCCTCACAGGACTGAGTAGTAGAGACGCCTCCGCTGAGGAACTAACCAACATCCTCCAGGAACCACACTTCAAGtctctgaTTGAGGCCCATGACAAGGTGGCAGCTAAATGTTATGAGATGCCGTCGGAGGTGAACAGTAATGCCATGGCGACCGGCCCCCTCATGCCCGCCGACGCTGTCAGGATAATTGGCATTCAGAAGAAGGCTGGCGAACCACTGggTGTGACGTTCAGGGTGGAACGCGGGGAGCTGGTGATCGCCAGGATCCTGCACGGCAGTATGATCGACCGGCAGGGCATGCTGCACGCGGGCGACGTGATCAGGGAGGTGAACGGGCGCGAGGTGGGCAGCGATCCCAAGGAGCTGCTGGAGCTGCTGAGGGACTGCCAGGGGGGCGTCACCCTCAAGATCCTGCCCAGCTACCGCGACACTCCAGCACCCCCACAGGTGCATCTGAAACCCCACTTTAACTACAGCCCAGCCACAGACAACCTGATCCCCTGTAAGGAAGCTGGCCTGGCCTTCTCTAAAGGAGATGTTTTGCACATTGTCAACAGAGAGGACCCTAACTGGTGGCAGGCAGTCAACATTGTGGGAGGAGCCACAGGACTGATCCCCAGTCAGTTcttagaggagaagaggaaggccttTGTGAGGAGAGAATGGAATGGATCAGGTGTTCTCTGTGGGACATTAAcaggaaagaagaagaagaagaagaagatgatgtACCTGATGTCCAAGAATGCAGAGTTTGACCGCCACGAGCTGCAGATCTACGAAGAGGTGGCCAAGATGCCTCCATTCCAGAGGAAGACCCTGGTTCTGATTGGTGCTCAGGGAGTGGGCCGGCGCAGTCTGAAGAACAGACTGATCGTCATCAACCCCCTGCTCTATGGAACCACCGTCCCCTTCACGTCTCGGCCTGctcgggaggaggagagagacggcCAGTCGTACTGCTTTGTGTCCCGGTCCCAGATGGAGACAGACATTAAGGCCCGTCGCTACCTGGAGCATGGAGAGTACGATGGAAACCTCTACGGAACCAAGATGAACTCCATCCACGAGGTGGTGGACGCAGGACGTACCTGCATACTGGACGTTAACCCACAGgCGCTGAAGcagttgaagacagcagagttcATGCCGTTTGTGGTGTTTGTTGCTGCTCCACCACTGGACACACTAAGAGCTATGCACAAAGCCGTGGTGGACGCTGGACTCACCACCAAACTGCTCACGgaGACAGATCTGAAGAAGACGGTGGATGAGAGCGCCAGGATCCGCCGGGCCTACAGCCACTACTTTGACCTGACCATCGTTAACGACAACCTGGACAAGGCCTTTGAGCAGCTGCAGGCGGCCGTGGAGCAGCTGTGTTCTGAGCCCCAGTGGGTCCCTGTCAGCTGGGTGTACTGAGAGACACAGCCTGGTTAGGCTGCTCCCTACTGGGCTGGAGGACACGCCACCCGCTGCTGGGCCCAGGAGCACATGGAGACTTGGAAGAGGTTGTCCCTAACCACCACGGTTGGGGTCAATTTTAATTCTGGATTTTCAGGAAGTAGATGAACTACAATTCCACATTTTTCCCATTGAGGAAAAGTGGAATGTCAGTGAACTTCctaaattgactgaattgaaatggaattgacccctaCAGGGATGTGAGAGCTAAGGACCCATTGAGACTTATGTTTGTATGGCAGCCCCAGTGGAGCCTAGCCTCACCTAGCCCCACCCCGTCTAGCACCACCCTGCCTAGCACCACCCCGCCTCACCTAGCACCACCCCGCCTAGCCCCACCCTGCCTAGCACCACCCCGCCTAGCCCCACCCTGCCTAGCCCCTCCAGGCTCAGTCTGCTCTGCACCACAGGCCCCATCTGTACACTATGCAACTCTCTGGatacgtcccaaatagcaccctattccctatgtagtgcactacttctgaccagcactacatagggagtagggagCCATTCGGAATAGAACCAATGTTCACAATACACAAGAAGAACTTTATTTATTGAACATAGTTTTCTAACTTTAACTTGACTACCTTTCTGTTCATATGGAACGAGAAACAAAATCATGGAGTTGAggatattttaaaaatatttaatgttttattttatcaCTGTTGGTTGCTCATAACGTTTAGAACAATAATACAAGCGTATTTATTCTGAAAGGAGATGTGAGAAGGGCTTGCTTTGTGACGATACCTCAGTGTGTTAAAACTCTTCTCAGTTTACATTGCATACAATACTTCATCTCCTGGCcactgtcccaaatgacaccctattcctttatatagtgcactactttcaccgGAGCCTTATCagccctggtcataagtagtgcacaacatagagaatagggtgctatttgagatgCACACCCGGTCTCATCTCTGAACCCTCCATGTAGAATAACAgccatgttctctctctttaaGGCAGACTAAGGGctgagagagaggtggtaatatCACACCACATCTGTGATATAAAGGTCTTTGTTGCTGTTTCTTGGATGAGACCATAATGTAGGCTAatacaatccccccccccccccctgttacgCCGCTTTCTGTGTGACGAGATTGTGAATGGTTTCATTAAAGGTCGACTCGAGATGTCGTTGCGTGCACAAAGTTAACATGTAGTGGATCCATTTCCTCCACAACTAGGGAGCATGGAGCACGAGGTTAAACTACTCcgctgttctggtcctgtagctACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCcgctgttctggtcctgtagctACCATGTTGTAGCAGCGTGAAGCGCGAGGTTAAACTACTCcgctgttctggtcctgtagctACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGCGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGCGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGCGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCATGTTGTAGCAGCGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGTGTGAAGCGCGAGTTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGCGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCATGTTGTAGCAGCGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCAGTGTGAAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACGTTGTAGCGCGAGGTTAAACTACTCCGCTGTTTTGGTCCTGTAGCTACCACATTGATGCAGCGTGAAGCGCACATGCTTTGTGTGACTGTATCTCACTCATCTCTATATCTTCGTTGCAACGTCATCTCGAGGAGTCTACTTTTAAATTCCATTGTATCGTCAGCGGACGGTCTCCCAGTTGGGTCAGTACTCTTGTCAGTACATGTCTGTATGGTGCTGTGTTTTATGTTGGAATAATACTTCCAGGAGACTGGACCTTGACAGCGTACTGCATCTGAGAACTATCTCTTTGTGATATTACTGAAACTTAACCAACTGCCATATCTACTTAAAAGTTATATATTTTACAATTTCAACAGAGcaaaacattgtattttcagatgtgtcaaataaattaacttttttttttttttttacaacttgtACTTATCTCAGGTCATATTTATCATATCCAGAGTGTGTAAAAATGTGACTTAATTTATTTCACAGAAGggtatatttgtttatttaaacaAATCCTATTTCAAAGGTGTAAATGTCTCCCATATTAGTCAATAGAAACAACCATTTGGCTTAGTTCATTAAATGTcagtagttacagtgccttcaggaagcaTTCACAACCCTCAacttttcacacattttgttgttacagcctgaatttgtttttttatttacatttagaTTTTATCACTGGCCAGCacataacaccccataatgtcaaagtggaattgtttattttttacaaattaactaaaaatttaaagctgaaatgtctagaGTCAATAAGAATTCAACCCCTTTATGGCAAGCATACCAAGACAGTGGCCAAGATACAATTTTAACTTAAATATATGGCAATACCTGAAAACGGTGGTCTAGAaatgattaacaaccaatttgacagagcttgaagaattgagAAAATAATGTGCAGATGTTTCActatccaggtgtggaaagtgCTTAGACTTACCCATAAACACTCACacctgtaatcactgtcaaaggtgcttctacaacaTAGTGACTCGGGTGTGAAAACTCATGTaacttatatttatatatatttcattTAAGTAAATTTGAAAACGTGtttattatggggtatttgtgTCTAGATGGGTGAGGGGAAAACAGATCTATATAATCCAGGCTATAACAAAACGTGGAATAAGTCCatgggtgtaaatactttctgaagacactataacaaacatataaaacacaacatgtaaagttttggtcccatgtttcatgagctgaaataaaagatcccagaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125043 lncRNA upstream 15070 6928705 ~ 6929195 (+) True G109748
TU125028 lncRNA upstream 39410 6903970 ~ 6904855 (+) True G109739
TU125027 lncRNA upstream 47595 6896423 ~ 6896670 (+) True G109738
TU124164 lncRNA upstream 64709 6879274 ~ 6879556 (+) True G109092
TU124160 lncRNA upstream 72538 6871511 ~ 6871727 (+) True G109088
TU125066 lncRNA downstream 2502 6997217 ~ 7090223 (+) True G109764
TU125074 lncRNA downstream 4163 6998878 ~ 6999180 (+) False G109772
TU125075 lncRNA downstream 4163 6998878 ~ 6999180 (+) True G109772
TU125085 lncRNA downstream 42729 7037444 ~ 7037840 (+) True G109782
TU125086 lncRNA downstream 54614 7049329 ~ 7050560 (+) True G109783
XM_021620021.2 mRNA upstream 222 6941465 ~ 6944043 (+) False LOC110535156
XM_036936652.1 mRNA upstream 222 6941475 ~ 6944043 (+) False LOC110535156
XM_036936541.1 mRNA upstream 5515 6912089 ~ 6938750 (+) False stk31
XM_036936548.1 mRNA upstream 5515 6912090 ~ 6938750 (+) True stk31
XM_036936531.1 mRNA upstream 33009 6908511 ~ 6911256 (+) False malsu1
XM_036936661.1 mRNA downstream 35910 7030625 ~ 7054266 (+) False LOC110535127
XM_036936663.1 mRNA downstream 38951 7033666 ~ 7054266 (+) False LOC110535127
XM_036936658.1 mRNA downstream 39110 7033825 ~ 7054266 (+) False LOC110535127
XM_036936659.1 mRNA downstream 39110 7033825 ~ 7078975 (+) False LOC110535127
XM_036936662.1 mRNA downstream 39131 7033846 ~ 7054266 (+) False LOC110535127
TU125022 other upstream 1182 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 33060 6908547 ~ 6911205 (+) True malsu1
TU124135 other upstream 75289 6856086 ~ 6868976 (+) True rbm24b
TU124063 other upstream 310352 6633078 ~ 6633913 (+) False G109020
TU125129 other downstream 140532 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 140532 7135247 ~ 7140979 (+) False G109821
TU125259 other downstream 308313 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 621244 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 707267 7701982 ~ 7706489 (+) True creb5b

Expression Profile