RNA id: XM_036936658.1


Basic Information

Item Value
RNA id XM_036936658.1
length 1886
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110535127
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7030625 ~ 7078975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTAGCAAAGACAAGTAAGTTACCCTCTTATATATGTGGAAGAGGACGTTTAAAAAGAAAAGTAGCATCTTTataaacacacactatatgatcGGTGAAAGCTGCTGTGCTGGTTTACAGTACCCAACTGAAAACCGATGCCCAGAGTTACCCATGATGTTACACAGTGATTGAAGTCAATAATTGTCAGACTCAATAGGACCTGAAGGAAGAAACTGTGAAAAACTCCAGAAACACGATCCATCACCATCTCTCAGATGTTTGCCAAAGCCACAAAAGCCTTCGTGAAGGACACAGATCATGCGGGTCGCCTGATCCCTGTGCCCAGTCTGAAtgacacagacaaactgaatctCCGATCACTCATTGTCAAGACCAGGCACAGATGCTTCTGGCAGGAACCCAAATACCAGTCCCCTGGCTTTACCCTCGGTGATGTTCTGGAGCCTGGAGAGCCTGGAAACACACCTTTAAGCCCAACTGTCAAGGAGTCTGACTTTGTGGACTACAGTGGGACATTTGGTGACAAGAAAGAAATGAACGCAGACGGAAACGTGGAGGCAAAGTTGGCTGATTTCAACCTGACCATCGGAGGGAAATGGTCCACCAAACAGAAGCTGTCCCTTGGCAGCCTGAACAAAGAGAAGGTTGATGTGAAGGACTTACACAACTACTCAAAAAACAGAGTTCTGGACATGTCCCATCCTGTGATCAAGCAGACCCGTGCGAATCCCAGGGCAGTGTTAGGTGTCTTGACGGAGAGGATTATGACGTCACTACCTTGCCCGGTCACAAACAATGTCCTTAAGCATGGCAATCTAGGAGCCAACGTGAGCGCCTGTGTGTTCCTGAGCGGGAAGGCCTCTATGAAGCAGATCGGCAGTACACAGACAGAAAGTGATGTGTCACTGGGTATTCCTGCAAATACTGTCATGGCCTACAGTCTGATTGAGCTCTACGTCAAATGCAATGGACAGTTTGAGCTGTGCCTCATCCGCAACAATGGGGGCTTTGAAAAGGTTTGGTCAAAGGATGAGATTGAAGAGGATGGAATTATGGACCTGAGAGGCGACTTTGATGCCAACAGCCCCTTAAATCTGAACAAAGaactggacaaactgaGTGGTCATTTCCAGCTGCTTTCAGTCCTGCCGGTGGCCAAACGCTCCTCTCTGCTCCAGCTCCTCAAGACAaccatggaggacagagagacagtcagtgtGCTGGAGAGTGTGCTGGATCAGATGTGTGAAGGCGAGACTCCTGACCTGGGTGATCTGGAAGAGTCTGAGAGGGAAACAGTCCAGGCCATACTGGATCTTGTAGACCAATGTGTTGGGAAGGATGAGGACGAGATCAGATCCTCACTTCTCAGTGCCTTCCACCTCATTGTCAGTGCCATGGACGgAATGACAGATGAAGGTCTCTCTGTGTTGGGATCCTGCTGCAGTCCTCCAGTCTTACAGGCCCTGCAGATCCTGGTGCAGCATGTGGCAGCAGGGAGTGGGGAGACCCTCTCTCTGAGAGATGCAGGTCTGGCTGTTCTGACTGAGGAGGAGCTGTATCAGAGGACAGAGAGTCTCTTTGGTCACTCTAAAGTTAcactgaagagagaggaggacacaCTGAGGACAGAGATGAAGGACCAGCCTGGATACCTTCCTCTAGTCATGAGTATCACTGTGAAAGGCCTGGCCTCTTTAGtgtaaggagggagaaagagggagagagagagagagagaccatgcaACTTGTAAATCCTGTTTGAACTGATACACTCAGTATTCCATTCCATGTCTTACTCTTGCACTAGTTGAGCTACAGAACTAGTGAACAACAGTGAATGTATCCTTGTAATGTTTTCAGTAAAGTTCAACAAACGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125074 lncRNA upstream 34645 6998878 ~ 6999180 (+) False G109772
TU125075 lncRNA upstream 34645 6998878 ~ 6999180 (+) True G109772
TU125058 lncRNA upstream 61750 6971786 ~ 6972075 (+) True G109758
TU125056 lncRNA upstream 63907 6969041 ~ 6969918 (+) False G109757
TU125057 lncRNA upstream 64351 6969041 ~ 6969474 (+) True G109757
TU125090 lncRNA downstream 183 7054449 ~ 7079398 (+) True G109787
TU125095 lncRNA downstream 10153 7064419 ~ 7064760 (+) True G109792
TU125096 lncRNA downstream 16160 7070426 ~ 7071439 (+) True G109793
TU125063 lncRNA downstream 35026 7089292 ~ 7108061 (+) True G109761
TU125100 lncRNA downstream 38160 7092426 ~ 7117995 (+) True G109797
XM_036936626.1 mRNA upstream 39110 6944265 ~ 6994715 (+) False mpp6a
XM_036936669.1 mRNA downstream 13017 7067283 ~ 7079077 (+) False LOC110535004
XM_036936665.1 mRNA downstream 13019 7067285 ~ 7079077 (+) False LOC110535004
XM_036936664.1 mRNA downstream 13020 7067286 ~ 7079077 (+) True LOC110535004
XM_036936692.1 mRNA downstream 228164 7282430 ~ 7304709 (+) False pde11al
XM_036936698.1 mRNA downstream 304639 7358905 ~ 7369148 (+) False cbx3b
TU125022 other upstream 90742 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 122620 6908547 ~ 6911205 (+) True malsu1
TU124135 other upstream 164849 6856086 ~ 6868976 (+) True rbm24b
TU124063 other upstream 399912 6633078 ~ 6633913 (+) False G109020
TU125129 other downstream 80981 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 80981 7135247 ~ 7140979 (+) False G109821
TU125259 other downstream 248762 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 561693 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 647716 7701982 ~ 7706489 (+) True creb5b

Expression Profile