RNA id: XM_036936659.1


Basic Information

Item Value
RNA id XM_036936659.1
length 1864
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110535127
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7030625 ~ 7078975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTAGCAAAGACAAGTAAGTTACCCTCTTATATATGTGGAAGAGGACGTTTAAAAAGAAAAGTAGCATCTTTataaacacacactatatgatcGGTGAAAGCTGCTGTGCTGGTTTACAGTACCCAACTGAAAACCGATGCCCAGAGTTACCCATGATGTTACACAGTGATTGAAGTCAATAATTGTCAGACTCAATAGGACCTGAAGGAAGAAACTGTGAAAAACTCCAGAAACACGATCCATCACCATCTCTCAGATGTTTGCCAAAGCCACAAAAGCCTTCGTGAAGGACACAGATCATGCGGGTCGCCTGATCCCTGTGCCCAGTCTGAAtgacacagacaaactgaatctCCGATCACTCATTGTCAAGACCAGGCACAGATGCTTCTGGCAGGAACCCAAATACCAGTCCCCTGGCTTTACCCTCGGTGATGTTCTGGAGCCTGGAGAGCCTGGAAACACACCTTTAAGCCCAACTGTCAAGGAGTCTGACTTTGTGGACTACAGTGGGACATTTGGTGACAAGAAAGAAATGAACGCAGACGGAAACGTGGAGGCAAAGTTGGCTGATTTCAACCTGACCATCGGAGGGAAATGGTCCACCAAACAGAAGCTGTCCCTTGGCAGCCTGAACAAAGAGAAGGTTGATGTGAAGGACTTACACAACTACTCAAAAAACAGAGTTCTGGACATGTCCCATCCTGTGATCAAGCAGACCCGTGCGAATCCCAGGGCAGTGTTAGGTGTCTTGACGGAGAGGATTATGACGTCACTACCTTGCCCGGTCACAAACAATGTCCTTAAGCATGGCAATCTAGGAGCCAACGTGAGCGCCTGTGTGTTCCTGAGCGGGAAGGCCTCTATGAAGCAGATCGGCAGTACACAGACAGAAAGTGATGTGTCACTGGGTATTCCTGCAAATACTGTCATGGCCTACAGTCTGATTGAGCTCTACGTCAAATGCAATGGACAGTTTGAGCTGTGCCTCATCCGCAACAATGGGGGCTTTGAAAAGGTTTGGTCAAAGGATGAGATTGAAGAGGATGGAATTATGGACCTGAGAGGCGACTTTGATGCCAACAGCCCCTTAAATCTGAACAAAGaactggacaaactgaGTGGTCATTTCCAGCTGCTTTCAGTCCTGCCGGTGGCCAAACGCTCCTCTCTGCTCCAGCTCCTCAAGACAaccatggaggacagagagacagtcagtgtGCTGGAGAGTGTGCTGGATCAGATGTGTGAAGGCGAGACTCCTGACCTGGGTGATCTGGAAGAGTCTGAGAGGGAAACAGTCCAGGCCATACTGGATCTTGTAGACCAATGTGTTGGGAAGGATGAGGACGAGATCAGATCCTCACTTCTCAGTGCCTTCCACCTCATTGTCAGTGCCATGGACGgAATGACAGATGAAGGTCTCTCTGTGTTGGGATCCTGCTGCAGTCCTCCAGTCTTACAGGCCCTGCAGATCCTGGTGCAGCATGTGGCAGCAGGGAGTGGGGAGACCCTCTCTCTGAGAGATGCAGGTCTGGCTGTTCTGACTGAGGAGGAGCTGTATCAGAGGACAGAGAGTCTCTTTGGTCACTCTAAAGTTAcactgaagagagaggaggacacaCTGAGGACAGAGATGAAGGACCAGCCTGGATACCTTCCTCTAGTCATGAGTATCACTGTGAAAGGCCTGGCCTCTTTAGtgtaaggagggagagagaggaggacacaCTGAGGACAGAGATGAAGGACCAGCCTGGATACCTTCCTCTAGTCATGAGTATCACTGTGAAAGGCCTGGCCTCTTTAgtgtaaggagggagagagagggagagagaccatgaAACTTGTCAATCCTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125074 lncRNA upstream 34645 6998878 ~ 6999180 (+) False G109772
TU125075 lncRNA upstream 34645 6998878 ~ 6999180 (+) True G109772
TU125058 lncRNA upstream 61750 6971786 ~ 6972075 (+) True G109758
TU125056 lncRNA upstream 63907 6969041 ~ 6969918 (+) False G109757
TU125057 lncRNA upstream 64351 6969041 ~ 6969474 (+) True G109757
TU125063 lncRNA downstream 10317 7089292 ~ 7108061 (+) True G109761
TU125100 lncRNA downstream 13451 7092426 ~ 7117995 (+) True G109797
TU125064 lncRNA downstream 25080 7104055 ~ 7105297 (+) True G109762
TU125068 lncRNA downstream 37453 7116428 ~ 7129520 (+) True G109766
TU125128 lncRNA downstream 59424 7138399 ~ 7140979 (+) False G109821
XM_036936626.1 mRNA upstream 39110 6944265 ~ 6994715 (+) False mpp6a
XM_036936692.1 mRNA downstream 203455 7282430 ~ 7304709 (+) False pde11al
XM_036936698.1 mRNA downstream 279930 7358905 ~ 7369148 (+) False cbx3b
XM_036936696.1 mRNA downstream 279931 7358906 ~ 7369148 (+) True cbx3b
XM_036936694.1 mRNA downstream 290368 7369343 ~ 7377095 (+) True snx10b
XM_036936783.1 mRNA downstream 417208 7496183 ~ 7531274 (+) False tax1bp1b
TU125022 other upstream 90742 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 122620 6908547 ~ 6911205 (+) True malsu1
TU124135 other upstream 164849 6856086 ~ 6868976 (+) True rbm24b
TU124063 other upstream 399912 6633078 ~ 6633913 (+) False G109020
TU125129 other downstream 56272 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 56272 7135247 ~ 7140979 (+) False G109821
TU125259 other downstream 224053 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 536984 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 623007 7701982 ~ 7706489 (+) True creb5b

Expression Profile