RNA id: XM_036936664.1


Basic Information

Item Value
RNA id XM_036936664.1
length 2256
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110535004
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7067283 ~ 7079077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACCCAAATACGTatagctacactcttagaaaaagggttccaaaagggttctttgcatAGGGTTCTACCAAGAGCCGTTTTCATCTGAAGAATCCTTTTTGGAAAATGATGGTTATTTAAGGTAAAAGATTCTACCTAGAACTTTTTATATCCTGCAAACCATTTTTGGAAGAAAGGGTTATTTGATAATTATTTGGAAGGAAAGAAGGGTTCTTCTACACAGAACCCTTCTGAATCTGAATAAGCtttttattgtacctttattggAAACCACATACATGAGaaccttacagtgacatgctaGCGGCTAGTCCACTGTTACAGCACAGTGTACAGTGGTAGAGAGAAACCTACATAGAATTCACATAGAAACCTGCTATTTTATACAATGCATTGTGATTGTGGACTGGTTGGCATAGTTGGTTCCAGCTGTAATAGGACGCTACTGTATTTAATCAAACTAGGAAACAAACTGTGGGTGTATTTGGAATGCAGTTCCTGTGTCATTGTGAGAAGGGGGTGTGGCAAAGACACTCCTCTTATAGGCTTGTGACTGACACATCCCCTTCAGAGATTTAGCACTGACTGAGTCCCAAGGACCTGGAGGAAGAAACGCCTGAGACACCATTCTCAACCATCTCCTCATCTGTCTCCTTGACCTCTTTGGACTTATAGCTATGGCTACGTTTGCCTCAGCAACAGAAAACTTTGTGAAGAACGTGGATTCTGATGGCAACCTGATACCTGTGTCCTCCCTGAACAACTGTGGCAAGTTGAACCCTCTCTCACTGGTTCTCAAACAGTCACCTTTCTTTATGAAAACCAAATACACGCCTACTAAGTTGACCCTCGATGATGTGTTTACCAAAAATACACCCTTAAATCCAGCTGTCAAGGAGTCTGAATTTGTGGACTACAGTGCGACATTTAGTGACAGCCGAGATGCCAGCGTAGACGTGGAGACAAAATTGGCGGCAGATGCAGTTAATGTAAACTTTAACATGGGGGCAAAACACGCCTCCACACACAAGTCGTCCCTTGGCAAACTGAAGAAAGAAGAGGTTGACCTGAAGTGGTTACAAAACAACTCAAAACACAAGCTTCTGGACATGTCCCACTATCTGATCCAGGAGGCCCGTAATAGTAGGTCTGTGTttggggtggtgatggagaggATTGTGACGAGTGAGCCGTGCTCGATAAGAGTAAAGAAGCATCAGGCTGGAAAATGTGGTGCTGGAGGGAAGGTCACTGGAGTCCCGGTGTCTGTAAAGGCGAAAGGCAAAGTACAAGAAGTCAAAGATGTGTTCCTGGAGATTCCTAAAAACACTGTCATTGCCTACAGCATTGATGAGATCATGGTCCAACTCGATGGACACTTTGAGGTGCGCTCCTTTGGAAAGGGTGGGTTTGAAAGAGCCTGGAACCTTGTAGGTTCATGCAATATGTCCTCGGTGGTGTCGCTCCCAAAGGAATGCCTCCTTCGTCAAGAACTGGCAAAACTGAGGGGTCATTTCCAGGTGCTGTCATCCCTGCCAACAGCTAAACGCTCCTCTCTGCTCCAGCTCCTCAAGACAaccatggaggacagagaggcagTCAGTGTACTGGAGAGTGTGCTGGATCAGATGTTGGTTGATGAGACACCTGACATGGATGATCTTATGGAGGAGACTGAGAAGCAGACAGTCCAGACCATATTGGACCTTTTACATGAGTCTGATGGAACAAATGAGGGCCAGACATACGACGAGCCACCCTCACTGCTCTGTTCCGTCAACCTCATTGTCAGCGCCATGAATGAAATGCCAGAtgggtgtctctctgtgttgggaTCCTGTTGCAGTCCTCCAGTCTTACAGGCCCTGCAGATCCTGGTGCAGCATGTGGCAGCAGGGAGTGGGGAGACCCTCTCTCTGAGAGATGCAGGTCTGGCTGTTCTGACTGAGGAGGAGCTGTATCAGAGGACAGAGCGTCTCTTTGGTCTCTCTGAAGTTAcactgaagagagaggaggacacaCTGAGGACAGAGATGAAGGACCAGCCTGGATACCTTCCTCTAGTCATGAGTATCACTGTGAAAGGCCTGGCCTCTTTAgtgtaaggagggagagagagggagagagaccatgaAACTTGTCAATCCTGTTTGACCCATTCAGTATTTTACTCCTGCGCTAGGTGAGCTGAAGAACTAGTGAACAACAGTGAATGTATCCTTGTAATGTTTTCAGTAAAGTTCAACAAACGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125095 lncRNA upstream 2526 7064419 ~ 7064760 (+) True G109792
TU125086 lncRNA upstream 16726 7049329 ~ 7050560 (+) True G109783
TU125085 lncRNA upstream 29446 7037444 ~ 7037840 (+) True G109782
TU125074 lncRNA upstream 68106 6998878 ~ 6999180 (+) False G109772
TU125075 lncRNA upstream 68106 6998878 ~ 6999180 (+) True G109772
TU125063 lncRNA downstream 10215 7089292 ~ 7108061 (+) True G109761
TU125100 lncRNA downstream 13349 7092426 ~ 7117995 (+) True G109797
TU125064 lncRNA downstream 24978 7104055 ~ 7105297 (+) True G109762
TU125068 lncRNA downstream 37351 7116428 ~ 7129520 (+) True G109766
TU125128 lncRNA downstream 59322 7138399 ~ 7140979 (+) False G109821
XM_036936661.1 mRNA upstream 13020 7030625 ~ 7054266 (+) False LOC110535127
XM_036936663.1 mRNA upstream 13020 7033666 ~ 7054266 (+) False LOC110535127
XM_036936658.1 mRNA upstream 13020 7033825 ~ 7054266 (+) False LOC110535127
XM_036936662.1 mRNA upstream 13020 7033846 ~ 7054266 (+) False LOC110535127
XM_036936660.1 mRNA upstream 13020 7034560 ~ 7054266 (+) True LOC110535127
XM_036936692.1 mRNA downstream 203353 7282430 ~ 7304709 (+) False pde11al
XM_036936698.1 mRNA downstream 279828 7358905 ~ 7369148 (+) False cbx3b
XM_036936696.1 mRNA downstream 279829 7358906 ~ 7369148 (+) True cbx3b
XM_036936694.1 mRNA downstream 290266 7369343 ~ 7377095 (+) True snx10b
XM_036936783.1 mRNA downstream 417106 7496183 ~ 7531274 (+) False tax1bp1b
TU125022 other upstream 124203 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 156081 6908547 ~ 6911205 (+) True malsu1
TU124135 other upstream 198310 6856086 ~ 6868976 (+) True rbm24b
TU124063 other upstream 433373 6633078 ~ 6633913 (+) False G109020
TU125129 other downstream 56170 7135247 ~ 7140979 (+) False G109821
TU125130 other downstream 56170 7135247 ~ 7140979 (+) False G109821
TU125259 other downstream 223951 7303028 ~ 7304645 (+) True pde11al
TU125753 other downstream 536882 7615959 ~ 7696242 (+) False creb5b
TU125754 other downstream 622905 7701982 ~ 7706489 (+) True creb5b

Expression Profile