RNA id: XM_036936841.1


Basic Information

Item Value
RNA id XM_036936841.1
length 1849
RNA type mRNA
GC content 0.59
exon number 11
gene id creb5b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7615910 ~ 7706660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATGCTTCTCTAAATAGAACGTATTGTAATCTTTTCTCAGTCCAACGTGGTTCCTTCTGAGAGTCTGTTGCGTATTTTCTACACTTGTTTGACTTATGAGGAGTTGGTGAGAGTGATGAACTCTGAGCAGGAAAGGCCGTTTGTGTGCAGTGCCCCTGGCTGTTCTCAGCGATTCCCCACAGAGGACCACCTGATGATTCACCGGCACAAGCATGAGATGACTCTGAAGTTCCCCTCCATAAAGATCGACAGCATGTTATCAGACCAGACGCCGACCCCGACGCGCTTCCTGAAGAACTGTGAGGAGGTGGGTCTGTTCAGCGAGCTGGACTGTTCTATAGAACAGGAGTTCAGGAAGGCCCAGGAGGAAGAGGACAACAAACAGGTAGACAAGATGACAaATATCTCTCTACATGGCCAGAACCTCCAGAACCAGCAGCATCACTCTCGGATGGGGAACCATGACAACAGCATAGTGATCCAGCAGGGCCTGTCCTCTCCCCAGTCCAACTCTGTCATCACCCAGGCCCCCTCCACCAACAGACAGCTAGGgcCTGTCCCTGGCTCCCTGTCATCACTACTGCACCTAcggaacagacagagacagccacTGCCTGCCTCCATGGCTGGAACCCTGCCAGACCCCACCATGCAAGGCTCCTCTGTACTGATGCCTATGGAGAGGCAGATGTCTATGTGTTCCAGTATGATGGGTATGCAGGGCCCCAACCATCCCAGCTCCTGTTCCTCCCCTCACGGACCCTCCATGCACTCTGAGGCCAAACTGAGGCTGAAGGCGGCGCTAGCACACCACCCGGGAGCAATCGCCAACGGCAACATGAACAGCATGGGTCACATGATGGAAATGATGTCATCgcggcagcagcaggagcaggggGGCGGCCACCACCACCTTCACCCCTCCCACCCTCACCAGCACCTGCCGGCTCCGCCCCACAGCCACGCCTACCAGCACCACCCCCACCATCACCACAGCGGCCACAGCCAGGGCGGgcaccaccacccacagggcCACAACCCCCATCACAACTCCCACCCGCCTCACCTCCACCCTGGGCACCCACACCAGACCTCACCCCCGCCTCACCTCCACACTGGACACCCACACCAGACCTCACCCCCGCCTCACCTCCACCCTGGACACTCACACCAGACGTCACCCCACCCTCCACTTCACTCTGGACCAGGGTCACATTCACAGttgtcgCCGGCGGCCCAGCAGATGCAGCCGAGCCAGACGATGCAGTCTCCGACCCCTAGCGGTGGGCGCCGCAGGCGGACGGTAGACGAGGACCCTGACGAACGGCGGCGGAAGTTTCTGGAGAGAAACCGAGCGGCGGCCACGCGATGCAGACAGAAGAGGAAAGTATGGGTGGTGTCGCTGGAGAAGAAGGCTGAAGAGCTGACCCAGACCAACATGCAGCTTCTGAATGAGGTGACCATGCTGAAGAACGAGGTGACCCAACTCAAGCAGCTCCTCCTCACCCATAAAGACTGCCCCATCACCACTCTGCAGAAAGACTCCCAAGGTTACCTCAgTCCAGACAGCAGTCCAGCAGGCAGCCCGGCCCCAGCCTGCTCCCAGCAGCAGGTCATCCAGCACAACAACATCACCACCTCCAGCACAGCTGTAGGGGGCAGCACTGTGCATGGCCTGCCCAACCACCGTACAGACATCAACCCCATCCACtagagacaagacagagagagactacagtaccccccccccagtctGTACCCCCCAACCCCCAAACTGTACCCCCAGCCCCTACCCCCAGTCCGTAACCCCAGCCCCCAAACCTTTGGAGAGAAACCTCTGAAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125734 lncRNA upstream 7635 7607906 ~ 7608275 (+) True G110312
TU125718 lncRNA upstream 32910 7582502 ~ 7583000 (+) True G110296
TU125716 lncRNA upstream 33689 7581386 ~ 7582221 (+) True G110295
TU125705 lncRNA upstream 52215 7563160 ~ 7563695 (+) True G110284
TU125663 lncRNA upstream 82090 7531763 ~ 7533820 (+) True G110245
TU125759 lncRNA downstream 280 7706940 ~ 7707860 (+) True G110332
TU125751 lncRNA downstream 2507 7709167 ~ 7709702 (+) True G110324
TU125757 lncRNA downstream 4939 7711599 ~ 7712283 (+) True G110330
TU125747 lncRNA downstream 6464 7713124 ~ 7714186 (+) True G110322
TU125756 lncRNA downstream 102884 7809544 ~ 7809989 (+) True G110329
XM_036936783.1 mRNA upstream 84636 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936792.1 mRNA upstream 84636 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936801.1 mRNA upstream 84636 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936806.1 mRNA upstream 84636 7496183 ~ 7531274 (+) True tax1bp1b
XM_036936694.1 mRNA upstream 238815 7369343 ~ 7377095 (+) True snx10b
XM_036936905.1 mRNA downstream 26297 7732957 ~ 7805441 (+) True chn2
XM_036936862.1 mRNA downstream 108590 7815250 ~ 7829304 (+) False plekha8
XM_036936868.1 mRNA downstream 108590 7815250 ~ 7829304 (+) False plekha8
XR_005034857.1 mRNA downstream 108590 7815250 ~ 7829304 (+) False plekha8
XR_005034858.1 mRNA downstream 108590 7815250 ~ 7829304 (+) True plekha8
TU125259 other upstream 311265 7303028 ~ 7304645 (+) True pde11al
TU125129 other upstream 474931 7135247 ~ 7140979 (+) False G109821
TU125130 other upstream 474931 7135247 ~ 7140979 (+) False G109821
TU125022 other upstream 672827 6941516 ~ 6943083 (+) True LOC110535156
TU125016 other upstream 704705 6908547 ~ 6911205 (+) True malsu1
TU126124 other downstream 191936 7898596 ~ 7935137 (+) True G110644
TU126159 other downstream 366706 8073366 ~ 8103920 (+) True G110674
TU126891 other downstream 1330144 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 1514825 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 1623609 9330269 ~ 9331616 (+) False G111453

Expression Profile