RNA id: XM_036936862.1


Basic Information

Item Value
RNA id XM_036936862.1
length 3168
RNA type mRNA
GC content 0.49
exon number 13
gene id plekha8
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7815250 ~ 7829304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTGGGCGGGATCTCACGCGATCACATGGAACCCCATTCATGTATGATTTACGTACTTTTCTGTCGTATCCAAATGAAACGGGTCCTTTATTTCCGAAAATCTTACTTGGGAATGAAATTGAGTCTCCAGGATCAGCTGTGGCCGGCGTCTTGTTCTAATAAACAAGTAATGAACCTCAGAAACAGATGAAGAATGGAGGGAATCCTATTCAAGTGGACAAATTACATAAGTGGTTGGCAGCCTCGCTGGTTTGTACTGGAAGGAGGGACTTTGTCCTACTATGACTCGCAAGAGGACTCCTGGAAAGGATGCAAGGGAAGCATCAAAATCTCAGTGTGTGAAATACAAGTCCACTCCTCTGACTTCACACGGGTTGACCTGACCATCCCTGGAGAACAGTACTTCTACCTCAGAGCCATCAACGCAGCGGAGAGGCAGAAATGGCTGGTCGCATTGGGATCTGCCAAGGCCTGCCTCACAGACAACCGAaccaagagagagaaagagcaCCAGGAGAACACAGAGGCTCTTAAGACCAAGATGTCAGAGTTGAGGCTGTACTGTGACCTTCTCCTCCAGCAAGTTAACCAGATCAAGGACAGTGAGGAGACTGAGGAGgCTGGGGAGAACCCTGGCACCATGGTGAAATCTACATGCACCACCTTCATCAAGACGTTGGAGGAGTGCATGCTGATCGCCAACCGCACCTTCAGCTCAGACCAGGCCACAAAGACCCCACCCGGGTCACCTCCCGTGGCAACCATCAAACCCCAGAAGGTCAaacctgtcaatcaatcaaatcaggAAAAACACAGGGAGTGTAAAGAAATCTCAGGAGGATCTGTAACACATGACAACCAGagccttgactctggagcagaGGGACCAGACCAACGAGACGGACCAGACACGCTCCCTGAGAGAACCACCAAAACACCCCCAACAGAAAATAGCCCAGTCGGCGGGGACCCCCAGGGCCCAGAGGAGTCTGCAGTGGAAGAGGAGGCCACTACCCAAACCACCCACACAAACCCTGACCCAGAACACACCGAACAACCAGCacagcaggaagaggaggaggaggaggaattcaAAGAGGTGGAGCAGGAAATGAGCAACGCccaagaagaagagaaacaggaagTGACCCAGAACCAACAGGAAGCTGTCACTGACCAAGAGGAAGCCAAGCTGGAGGAGGAGCAGCCTGCCCAGCcacagggagaagaggagacgacAGAGCAGGTGGACACATTCTTCAGTACGATGAGTCACAGATTTAGTGATATAAGACTGGACGGTGACAGTGGTATTCCTACACAAGCCTTTTTGGACTCATGCTATGCAATAGTGCCTGTATTAGacaaaCTAGGATCCACAGTATTTGGTCCAGTAAAAATGGATTTTACAGGCAACATCAAGAAGATCCACCAGAAGCTGTCGTCGGACCCGGGCAGCTTCCCCACACTGCAGACCATAGTGCTCCACGAGGTGCAGACCGGCGTGGCCCGCGTCCGCAACTCAGCCACCGAGGCCCTGCTGTGGCTCAAACGAGGACTCAAGTTCCTCAAGGAGTTCCTGTCCCTGGTCAACTCTGGGGAAAGGGATATCCCCGGAGCGCTGGGTAATGCTTATGGACGGAGTCTGCGGCAGTATCATGGATGGGTTGTGCGAGGTGTATTTGCTCTGGCCCTCCGAGCAGCGCCATCATACAGCAGCTTTGCGGCGGCTCTGGTGtccagagagggggaggaactGAAAGAAGGATTCAACACAGGCATGCACCGGGACCTGGGGGTCTACCTGCCTGCCATGGAGAAACAACTGGCCATCCTGGATGCCCTGTATGAAGAATACAACCTGGAGTCAGATGAGGTGGTCTGAGAGGAGGAGACGAGATCCCAACTGGTGGCCTGAGAGGAGGAGACGAGATCCCAACTGGTGGCCTGAGAGGAGGAGACGAGATCCCAACTGCTGGCCTGAGAGGAGGAAACGAGATCCCAACTGCTGGCCTGAGAGGAGGGGACGAGATCCAAACTGGTGGCCTGAGAGGAACACTaccagaggaggaagagagccCTCAGACTCAGACCATCTGGGATACAGTGacgaaggaggaggaggaggtagaagaggagagccCGATATGAGCCGCCGCAGCAGAGCAGTGGCTCTGGTGTACTTGATGTAGTGTACAGTACTTTAGACTCAGGCTCTTTTCCCTCCTGGAAGTCACTTCCATTATGAACAGCTGCACCATTGGTGGCTGAGATTGCACAAATATGGACTTTTACTTTAAATTGAGGCTGATATTGTTATTATTGACAGCATTATTTGACAGCCTACATAGGCTGCATGTAATGAACTGCATACAACACTGAAGAGTATAATGTAGCGGTGTTAGTATTGATCCCTGCTGAACTCCTACACCAATATACTGTACCTACATGGATGACATGCGTACCACCACcaacccacctcctccaaccccctccctccagaacccacctcccccctccctccagaacccacctcctccctccagaacccacctcctccctccagaaccaacctcctccctccctccagaaccATTCTCATTCTCTCACATTGTCTCATCTACAAATGTATTGTTTACCAAGTGACATTAACATGAACTATTATTTTCCTCCTTATCGTAATCATTTAAATGTAGTCTTTATGAGTAACTTATGGAATAAACCATGTTCTATATGGATGGgaaatgtccatgttttaatGTATAGGGTTCGACTGAGGTGCCAACTGAAGTGGGATATATAGCAAGGCCttgattcaaaatgtattaacaaTCATGGTGGATAGATTGTTATTGTCTTCTATTAGCTGACTTTCCTCTCTGTGACTGATGTTGTGAGTTAAGAATAATACAACGGGGATCATCATAGAGGCAGTCTAACTTTGGCCTCTTAGTTCTGGACATTAATTCAGTCTTGTTATAGATGCACTGAACCATTTGGACAAAGCAGGAATATCTGACCGATTTGCAATAGGCTGATTCCTTGTTGTGAATAATTTCTAGTGTTAATGCTAATGTTTTTGTATCTCACAATTTCAGAACACATTTTATACGAATGTACATAAGATGGCATTTTTACATATGTATTAAACTGGATGAAATCGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125756 lncRNA upstream 5261 7809544 ~ 7809989 (+) True G110329
TU125747 lncRNA upstream 101064 7713124 ~ 7714186 (+) True G110322
TU125757 lncRNA upstream 102967 7711599 ~ 7712283 (+) True G110330
TU125751 lncRNA upstream 105548 7709167 ~ 7709702 (+) True G110324
TU125759 lncRNA upstream 107390 7706940 ~ 7707860 (+) True G110332
TU125835 lncRNA downstream 9180 7838484 ~ 7839533 (+) True G110405
TU125839 lncRNA downstream 19840 7849144 ~ 7851587 (+) True G110409
TU126121 lncRNA downstream 42454 7871758 ~ 7872286 (+) True G110642
TU126127 lncRNA downstream 50556 7879860 ~ 7904188 (+) True G110646
TU126144 lncRNA downstream 83227 7912531 ~ 7981149 (+) True G110660
XM_036936905.1 mRNA upstream 9809 7732957 ~ 7805441 (+) True chn2
XM_036936841.1 mRNA upstream 108590 7615910 ~ 7706660 (+) False creb5b
XM_036936848.1 mRNA upstream 108591 7615910 ~ 7706659 (+) False creb5b
XM_036936792.1 mRNA upstream 283976 7496183 ~ 7531274 (+) False tax1bp1b
XM_036936921.1 mRNA downstream 919 7830223 ~ 7857449 (+) False LOC110514761
XM_036936918.1 mRNA downstream 923 7830227 ~ 7857449 (+) True LOC110514761
NM_001124687.1 mRNA downstream 139794 7969098 ~ 7971187 (+) True LOC100136727
XM_036936997.1 mRNA downstream 156524 7985828 ~ 7988121 (+) True LOC118937630
XM_036937004.1 mRNA downstream 177527 8006831 ~ 8014142 (+) True LOC118937631
TU125754 other upstream 108761 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 119008 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 510605 7303028 ~ 7304645 (+) True pde11al
TU125129 other upstream 674271 7135247 ~ 7140979 (+) False G109821
TU126124 other downstream 69292 7898596 ~ 7935137 (+) True G110644
TU126159 other downstream 244062 8073366 ~ 8103920 (+) True G110674
TU126891 other downstream 1207500 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 1392181 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 1500965 9330269 ~ 9331616 (+) False G111453

Expression Profile