RNA id: XM_036936918.1


Basic Information

Item Value
RNA id XM_036936918.1
length 4560
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110514761
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7830223 ~ 7857449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTGTAAATTTAGCGCTCACTGAGGCAGGATATTTAATGGGCAATGGTTGGCAGGCACCCCCCTCCTAAAGACGCAGGgatactgagagaggagagagcgggcTGTTGAGGGCAGTAGgcaagagagagtcagagagtgaGAGTGGAGTCGTTTTGCTGTGGCTCCTCAGTAAACCCAAGTTGGAGAGAGAGGGCATTGTATTGACAGCAGCATGATCCTTATCACATTTGGACTCTATCTTCCACTATTGTTTTGTTATGTCTTGTCTCAGTCCTCTTTCCTGGACAATATTCTCTCATTCCCAGCAGCTCTCCAACAACAACCTGCCGTGGACCAGCAGAGGAAATTCAACCCCTGCTGTTTACAGAGTCCACCCCCGCCCCCCctattccctcctcctccctcactgtGGCACCCCGGTGGTCATAATGAGGAGACCAGTAAGGGAGGTGATCACAGACCAGATCCAGATACAGGGACGGAGCTGAAAGGGCCCAGCTGTGTCCCAGGACCCCCTGGCCCCAACGGACCCCCCGGTCCTCAGGGTCCAGCTGGGCTACCAGGTCTGACGGGACCAAAAGGTGAAAAGGGAGAACTGGGACGACCTGGACAAAAGGGTCGGACGGGGCCTCCAGGTCTCCCGGGGCGCCAGGGACCAGCCGGGTGGCCAGGACCAAATGGGCCCAAGggggagaagggagatggTGGATTGATGGGAATACCTGGAGCAAGAGGACCTCTTGGACCTAAGGGTTTACCTGGATACAAAGGAGAAAAGGGTTCCCGTGGTGACCGTagtgagagagggatgaagggagacaAGGGCACAATGGGCTTCCCTGGAATGCTTGGACAGAAAGGGGAAATGGGTCCAAAGGGAGAACCTGGAATCTCAGGGAATAGAGGACCGACGGGCAGACCAGGGAAGAGGGGCAAACAGGGAGGGAAGGGCGACAATGGGATTATCGGCCCTCTAGGTCCAGCAGGTCCTCAGGGGCCCCCAGGCCACCCTGGTCCCCCAGGTCTCCCAGCCTCAGGACTCTACGTGGTTGGAACGAAAGGTGAGAGGGGGCTACCAGGTCTTCCTGGACCTTGCAGCTGTAACTCCATTAGTGTGAAGAGTCCACAGTTTGATGAACATAGTTCCAGGAGCGACTACGCCAAAGTGCCGGCGATATTTGTGGTAAACAATCAAGAAGAACTAGATCGTCTTCATACGGACAATGCCCTAGCCTTCCGGAAAGACCAGAGATCGCTTTACTTCAAAGACACCAGCGGATGGCTGCCCATTCAGACTTCTTTCTTCCAGCTGACGCCGTTCCAGTCTACGGAGAACGCTCCGGAACAGGAGGGTTACTGTGGCGACGGGATCGTTCAGATTCCCAATGGGGAGGAATGTGACGACGGGAATAGGATTGTCACCGACGGCTGCGTCAAGTGTAAACATGCTTACTGTGGAGATGGTTATCGCTACGACGGGGCCGAGGAATGTGATGGAAAGGACTTTGGCTATCAGACATGCAACTCATATCTCCCAGGGTCTTATGGTCGTCTCAGATGCACTCCGTACTGTGTCATTGACTCTACAAACTGCAAGTATTTCACATGAGGAGGACCCTGGACACAGCAGTGGGATCCTTCTTGTCTCGTTTGCTTTGGTACTGAATAGGATGACGGTAATGCAAATAAAAGatcaacaacaacactgcaaaCAAGAGACTCAAAAAGGAAGTGTTGACAAACTGGACTAAGCCTGACAAAataactaaaactacacacactAACTCTGTTGTATCGCTGCTGAAGCCATGTAGCTCCCGAGGAGGGGAGCCGGGGCCGGTAAAACGTCCCCTCATCCATTCGCACTGGACAATTTCACTTTGTCTTAAATAAAACTCAACTCAAGACTGAAGAGGCTCTGCCCAACTGATAGGACCAGCCGCTGAACGAGAGGCGGTCAAATGAGAGACAGCCAGGAAGGGAAAGACAGCCAATGGGAAAGCTCTGAGAAAGTGAGAGACTCGTGGGTGGAGCCGGAAGCCATATTTACCTCGACGTAGAACTGTTAAAGAAGAGAGAACCAGGTCTGAACAATCAGAAGTAGGGTGCTGTGTATTTTACTGCAATGTCAATGACGTCATGTACTGTAGCATTTGCATGAGGCTGAGATTGCTGTGAGACCATGGCCACAGATGTCATTACCTAGGCATTTAACCAATCACAATACTTACTATCGTTGTCATGAGCTtcgtactgtgtatatatagtagGTATACGTCTCCAATTGTACGTAGGGAGTATATTGTATGTTATAATTGTACTAATCAGGACAGCAGGGGCATGTTAGTACATGTTATACAGTATTCAGGAGGATTCTGAGAGCCTTGGTCAGTCTGTACTGAAGCCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAACCTTGGTCAGTCTGTACTGTAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGTAGAGGCAGATCTTAAACCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAACCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGTAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGTAGAGGCAGATCTTAAACCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAACCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGTAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGTAGAGGCAGATCTTAAACCTTGGTCAGTCTGTACTGAAGAGGCAGATCTTAAGCCTTGGTCAGTCTGTACTGAAGAGGCAGATCTGAAGCCTTGGTCAGATCCTCTTCAGAAGAACAGTAaagctatgtactgtacagtagtagcATTAAGCCAAGATGACTGCCTGTGGAAATAGCAGCCAAGCTGATAGACTGGGAACCCTCACCTTCTGGTAGAACTGAACAGCtgttgtcccaaatgacaccctattccctatgtagtgcactacttgtgacaagagtcctatgggccctggttaaaagtagtgcactatataggggatagtgtgccatttggacaGCCAGGCCCGTGCGCTCTTAGCTTTTGATGGCACTGTACTGTAGTTGAAGAGGGCCGTTCAGAATGTGGACATTGTGGGCAAGGTCAAGCTTTGCTTTAGTTTAGATTGACATTTCCACGGTTTAACTCAGGAACCTCTAACATAATGTTTTCAGAGAAATCCTCCCTCATATCCACTGTAGAACACAGATGAGACCAATGAGTCTATGCTGCACACTGACTGTTACACTGCCCCCCTCCTCACTCAGATGTGCTTACTGTACATGTTGATGACTCGTGCCCTCAGTCCTCCAGGTAAAGAGGAGGACCTCAGTGAACTACTGTCTGCAGGGAGATATGACACGTGAAGGCAGGCAAACTGTtattattactgctactactacatgtTCTTAAATCATTTCCTCATTGCAGAACAGGAAGCTTGTTTAGCTGCTAATTGGTAGGAAGTGAATTCCGATAGTTAGGGTGGGAAACCTTATGACAGTCTAGAAAGCTCTGGACATCTTCCTGTCTCGTATTTATAGCAGCACTCCTCTTGATACCTCCAGCCTGCCTGTTATATAACTGGAGCAGAACTACTGCACCACTCAGTGGAGAACTGAACACTATAGTTGTAGTCTGCAGTACTTCCTGTATTCCCTCAGTAGTTTAAGAGAACGTTTCAGGATAAGCTGTTCTTTACCACAAGCTATAGGTCGCCGTGCCAACGGAGGCCGACCTTTAACCTCACCCACACTTAGGAAAATATTGTTGCTCACGTAAAAGTGGATGTATGAAAATATGTCATTTCAAGACTGTTCTAAATGTTACATCTGCATGTTAGTGGTACTGTAATTTACAAGTTTAAAATGCAACCGATTTGCCAAAGGAGACTGTGAATGAAGCCTACATGCTGTAAGTAAATATTAGTCAACTCTCGACAAGGTATATGCTTTTAAAGAAATATTGATGGTTCTTGTTAATGTAACTGTATAACTGTAAGGACTGAATATTACGTCAACTTTTATATGACAGGTATAAATGTATTATCCATTGCACCGTGTATAAACACATGAAATATCCATTTGTTTGGCTAATATGAGTGTACTGTATGCTGTAGGTACACTGGTAGCATGTGATAACATTACACAATGCTTTTTGGTGGTGAATGCACTCGCATATCAGGATTTCAAAACTCCTCTCTGATTTCATAATTAAAACATGTTTGACACAGACATGCATTATTGAGAACAAAATAAAGATGAGAAAATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125756 lncRNA upstream 20238 7809544 ~ 7809989 (+) True G110329
TU125747 lncRNA upstream 116041 7713124 ~ 7714186 (+) True G110322
TU125757 lncRNA upstream 117944 7711599 ~ 7712283 (+) True G110330
TU125751 lncRNA upstream 120525 7709167 ~ 7709702 (+) True G110324
TU125759 lncRNA upstream 122367 7706940 ~ 7707860 (+) True G110332
TU126121 lncRNA downstream 14309 7871758 ~ 7872286 (+) True G110642
TU126127 lncRNA downstream 22411 7879860 ~ 7904188 (+) True G110646
TU126144 lncRNA downstream 55082 7912531 ~ 7981149 (+) True G110660
TU126157 lncRNA downstream 198126 8055575 ~ 8138469 (+) True G110673
TU126188 lncRNA downstream 272312 8129761 ~ 8132133 (+) True G110702
XM_036936862.1 mRNA upstream 923 7815250 ~ 7829304 (+) False plekha8
XM_036936868.1 mRNA upstream 923 7815250 ~ 7829304 (+) False plekha8
XR_005034857.1 mRNA upstream 923 7815250 ~ 7829304 (+) False plekha8
XR_005034858.1 mRNA upstream 923 7815250 ~ 7829304 (+) True plekha8
XM_036936905.1 mRNA upstream 24786 7732957 ~ 7805441 (+) True chn2
NM_001124687.1 mRNA downstream 111649 7969098 ~ 7971187 (+) True LOC100136727
XM_036936997.1 mRNA downstream 128379 7985828 ~ 7988121 (+) True LOC118937630
XM_036937004.1 mRNA downstream 149382 8006831 ~ 8014142 (+) True LOC118937631
XM_036937008.1 mRNA downstream 160829 8018278 ~ 8020571 (+) True LOC118937632
XM_036937020.1 mRNA downstream 168521 8025970 ~ 8028263 (+) True LOC118937633
TU125754 other upstream 123738 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 133985 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 525582 7303028 ~ 7304645 (+) True pde11al
TU125129 other upstream 689248 7135247 ~ 7140979 (+) False G109821
TU126124 other downstream 41147 7898596 ~ 7935137 (+) True G110644
TU126159 other downstream 215917 8073366 ~ 8103920 (+) True G110674
TU126891 other downstream 1179355 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 1364036 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 1472820 9330269 ~ 9331616 (+) False G111453

Expression Profile