RNA id: XM_036937074.1


Basic Information

Item Value
RNA id XM_036937074.1
length 3737
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC118936503
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8132439 ~ 8159036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGCGTGTGCGTACCCGGTGGGTGGAGCTAAAGGGGGTGTGAAAGAAATGACCACAAATGTCCAATTTCGGCAGTTTGCATGACGTTTGTTGTAGCTATGAAATTCTCGCGTGGCTAATGTTCGGGGAATATATTCCGATTTGATTTATAGTCCATCCGCGTTTGGCAAGGAAGCTCGCAACGGCTCAGTGTTGGCAATTTATCATCTTTCTCTTCTTTGAACTTTTCCACTTTCTCTAGCTAAATTAGGTTGTTAATATATGTAGCAAACATCTCTTTCTTTTCGCTTAATAATGCAGGTATGCATTTAACTGGCTATATCGTTTTGTAGTATGCATGAAAATGCATCTTACTGACCATGTTTTGGTTTGAttgtcagctagctaacatgatGCATGTTATTTAGCTAGCCTAGCAGAAGCAGGGATTTGACTGCGTACCCTGTCCTGTCAGCTAGCTAGTTGTCTTTCTAGTGCGCTTGGCATTCCATAGTACACATTGGAAAAAATAGCACCAACATGTATGCAAGTCGCAAGAGGAAAAAGCCCCAGAGAAGGCTACATAACAAGACCGAGGAATATCATCATATGAGACATTGATGGCAGACATTCTCCTCCTCGTAGTGTGAAGCCACCTCCAGAAGGAGCTAAATCAAACCCTTCCAAGAGGCACCGGGAACGCCTGAATGGGGAGTTGGACAGGCTGGCCAGTCTGCTTCCTTACCCCCAGGATGTCATCTCCAAGCTGGACAAACTGACCATCCTCAGGCTTTGTGTCAGCTACCTGCGTGCCAAGAGCTTCTTCAATGTGACCCTACAATCCACAGCCTCCCAGCGCCCAGAGAGTAATGTTCTGAAGAAGAAAGAACTTCACGTTCCAGAGGGAGAGCTCTTACTACAGGTGTTGAATGGCTTTGTTCTGGTCGTCACGGCTGGTGGCACAATCTTCTATGCATCCTCCACCATCCAGGACTACCTGGGCTTTCACCAGTCAGACGTCGTCCATCAGAGTGTTTATGACGTCATTCATATGGAGGACCGAGCAGAGTTACAGAGACAGCTCCACTGGGCCCTGAACACCCCTGACACCGGACAGCTGGTCTCAGATTCAGCCTCGCCACAGGCTGTCACAGCCTACAAGCCAGAGGCACTCCCACCAGAGAATTCCACCTTCCTGGAACGCAACTTTGTCTGCAGGTTAAGATGTCTCCTGGACAACTCCACTGGCTTCCTAGCCCTGAACATCCAGGGGCGTCTAAAGTTCCTCCATGGCCAGAGCGATAGGACAAAGGAGGGCAAGGCCATCCCGCCTCAGCTGGCTCTGTTCGCCCTGGCCTCTCCCTTACAGCCCCCCACCATCCTGGAGATCCGCACCAAGAACTTCATCTTCAAGACCAAGCACAAGCTGGACTTCACCCCCATTGCCTGCGACGCCAAAGGGAAGATGGTGCTGGGTTACACTGAGGCTGAGCTGTGCAACCATGGCTCAGGATACCAGTTCATCCATGCTGCTGACATGCTGCACTGTGCTGAGAACCACATGAGGATGATAAAGACCGGAGAGAGTGGGATGACAGTATTCAGGCTGCTGACCAAGCTGACAGGCTGGGTGTGGGTGCAGGGTAACGCCAGACTGGTCTACAAGAACGGACGGCCTCAGTGTATCATCACATCCCAAAGAGTCCTCACTGATGAAGAGGGAGAGGACAACCTAAGGAAGCGGAGCCTCCAGCTGCCTTTCAGTTACACCACTGGGGAGGCTCTTCTCTACAACACCAGCTTCCCCAAGACTCTGCTAACAGGGGACTCCTTAGCAGGCGACACCACCAGCCCTGCAGGAAATATCACCAACAACAACCAGGATGGAACCCTGGACCCTGACTCACTGCTGGGCTCTCTGCTGAAACAGGACAAGTCCATCTACTGCTGCTCCCCTCACACTCAGAATGAGCTCCAACTCCCTCTCCAACTCCAGGAGGAGGTGGCAGGGGTTCCACAGGAGGAGGTGGCAGGGGTTCCACAGGGGGATTGTGGGGGCATCTTCTCCAGCAGCTGGCAGGAGGGCAGCATCCTCTCTCTGTCGGAGAGTGTCCTCTTCAAGCAGGAGCCGTTGGGGGTTGGTGGTGGCGGGGGGATCGACGGCTTCTCATCGGAGGACAGAGACAGGGATTTGTGGAGCTTCATGATGAACCTGGGCATCAGTAGGGAGGATCTGGAGCTGTTCCAGCAGGATGAGATGTTCCTTGATGTGGATCTGGACACTGGCCGAGACGACCTCCTTCCTGACCTGACAGACGAGATTCTCTCCTACGTACAGGAGTCTTTGAGGAAGAGGTCGGACTGGGGTCAGACTGTATTCTCTTGCAGGGGGGCTAAGTTAGGGGAACAGGACTATAGCTGCCCTACCACGCTGTTACACCAACCATCTATGGAACAATCACAAACCCCACatctacattctactacagttcCGTTACACCAACCATCAACCTCACGACCACATTCTTCTACAGTGCCTCAGTGTCAGTcacagatacagccaccacaGCTGCCTGTAGTCCATCCCCTATCAGTTCACCACTATCGGCCTCCTCCCCACTACCCACAGCAGCCAATACCGCGGCAGTGTTTACACACACAGCCCCACCCACAGGCaacacagcagcagcaacagagcCATCTAAATGGACAGGTATTGCCAaaccaacagcagcagcagcagctgtgtaACAGACTGAAGCACATGCAGGTGACTGGGACGGGTTCAATAACACAAAGacagaatgacatcaccaagcagCAGCAGATTCCTCCATTGTTCAATGTGGAGCAGCCAGGGGGGCTCCAGACTCACCACGGCCACCCCCAGCATGGGCACCTCTGCCTGGGGGAAGCTTCCCTGGGCCTCCCCTACAGGAACCAGCTGAACACTTTGTCTGTTAGCCACTCTTCAGTGCTCTCCTCCTATGTACCCACCACGGGCCTCCAGAGCCAGGGGGTGGACGGAGACCTCATGCCCCAGAATTTTGAGGAGTTGCTGGGCAGCCTGGAGTCCAGTGGTCCCCGAGGGACAGAGGATGGTAGGGGAGCGCTCcagtggagtgtggtggaggcCCTGGGTGTGTTCCAGCAGCAGAGGCACCTCCCTGACGGCCTGGCTCAGTCTCAGGCCACCAGCCAGGGCTGCGCTCAGCATGCCTATCCCCTGGCTATGGGGCTCAGCCAGGTCAATAGAGCAGAGTGGCCATTCACCACACAGGTAAGAAAGGTGACACTAACCTGGGTAGTGTTCATTAGGCGTCAAACAGGTAAAGGGGGTCCTACCTGAACTTGTCTAATAAAAATGCTAATAAATACGAAATTGTGCCCCAAGGAACAagatcaaatttatttataaagtccttttttacatcagcagatgtcacaaagtgcttattcAGAAACTCAGCCTTAAACCAcagacagcaagcaatgcagatgtagcaGCACCGGGACTAGGGCCCTGAACTAATTATGTAAAATGTTAGACCTATGCGCTTTACTTCCTCTAGCTATATGCTCATCATATGAACGTTGAATACCAATGCCACATACTTACTCACGCATCAGATTTACCAAGGGAATGAGACTTTAGAAACAGAAGGTCATTATCATTTGATCATTGAAAGCCAGTGGGTATTTACACATCAAGGCAATTTAGACCAGAAAAGGGAGGCTTAGCTAAGTCGGCCATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126188 lncRNA upstream 307 8129761 ~ 8132133 (+) True G110702
TU126144 lncRNA upstream 151291 7912531 ~ 7981149 (+) True G110660
TU126127 lncRNA upstream 228252 7879860 ~ 7904188 (+) True G110646
TU126121 lncRNA upstream 260154 7871758 ~ 7872286 (+) True G110642
TU125839 lncRNA upstream 280853 7849144 ~ 7851587 (+) True G110409
TU126258 lncRNA downstream 114956 8273991 ~ 8274437 (+) True G110751
TU126206 lncRNA downstream 125275 8284310 ~ 8329229 (+) True G110717
TU126449 lncRNA downstream 180876 8339911 ~ 8340121 (+) True G110900
TU126453 lncRNA downstream 185153 8344188 ~ 8344471 (+) True G110904
TU126488 lncRNA downstream 218210 8377245 ~ 8379321 (+) True G110936
XM_036934583.1 mRNA upstream 79410 8050410 ~ 8053030 (+) True LOC118936929
XM_036937027.1 mRNA upstream 91869 8033190 ~ 8040571 (+) True LOC110516794
XM_036937020.1 mRNA upstream 104177 8025970 ~ 8028263 (+) True LOC118937633
XM_036937008.1 mRNA upstream 111869 8018278 ~ 8020571 (+) True LOC118937632
XM_036937004.1 mRNA upstream 118298 8006831 ~ 8014142 (+) True LOC118937631
XM_036937123.1 mRNA downstream 46065 8205100 ~ 8327730 (+) False LOC110514591
XM_036961564.1 mRNA downstream 76868 8235903 ~ 8262731 (+) True LOC118944039
XM_036937112.1 mRNA downstream 106670 8265705 ~ 8327730 (+) False LOC110514591
XM_036937110.1 mRNA downstream 106675 8265710 ~ 8327730 (+) False LOC110514591
XM_036937107.1 mRNA downstream 106678 8265713 ~ 8327730 (+) False LOC110514591
TU126159 other upstream 28520 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 197303 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 425951 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 436198 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 827795 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 877769 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 1062450 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 1171234 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 1171234 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 1171234 9330269 ~ 9331616 (+) False G111453

Expression Profile