RNA id: XM_036937110.1


Basic Information

Item Value
RNA id XM_036937110.1
length 4519
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110514591
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8205100 ~ 8327730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCACACGATTGGCTGGCTCGTGGCATGCTTCCTCACACGATTGGCTGGCTCAGGGCATGCTTCCTCAAGAGCAGTACAGATATATGAATATCCAGTATCCAATATACAGAATATGGTGCTCGTTTGTTACTCTCAATGACTAACCAATCATCTTGAGATTGAACTAAAACCAACCTATCAGAAATGGGCTGCTTGAACTAATAACCAACCTATCAGAAATGGGCTGCTTGAACTAATAACCAACCTATCAGATATGGGCTGCTTGAACTAATAACCAACCTATCAGATATGGGCTGCTTGAACTAATAACCAACCTATCAGATATGGGCTGCTTGAACTAATAACCAACCTATCAGAAATGGGCTGCTTGAACTAATAACCAACCTATCAGATATGGGCTGCTTGAACTAATAACCAACCTATCAGATATGGGCTGCTTGAACTAATAACCAACCTATCAGATATGGGCTGCTTGAACTAATAACCAACCTATCAGAAATGGGCTGCTTGAACTAATAACCAACCTATCAGAAATGGGCTGCTTGAACTAATAACCAACCTATCAGAAATGGGCTGCCAATAAGAATAGAAGTTACGTTGTCAAAATACAGAATATCACAGGCACCATAAACTACCATGAAAGAAAAACAACAGTAGCAAGACCTTGTACGGATGAGgaaatatatttgatttggaTAGTATGTTTTGGAAAAAGGGATATAAGGATGAATCTTGTACGAGAGAAAGAAATGAAGAATCCCAgttgagagagggtagagagagagagagggagagagagatgagagagggagagagatacatagagggaaagagaaaggagagagagataaatagagttgaaatgagagaaagagtgagagaaaagagcaagagagagagagagagagggggagagagaggaatcaaGCAGAGTGAGCCTCCATCTGCAGCTTGGCTGGGCTCTgctctgggagagagggagggagagagtcagtcagGAGACATGCCTTCTGGCAGGAATCTAGCTGTAGAGCTGTAGAAGAGACAGCTGTGTTTGGTGGAGGTATTTTTAAACGCATCAATGCTGCTCCAATCCCCTCGCCTCGGCCCTCCTATTTATAGCTGGGGCCGGCCATTGTTCTATTTCTGTCACCTGTGGGCCACGCTGTTGTTAATTCACATGCAAATGAAGCTTGCACCCTCTCCGGCTCAAGCATTACTTTCCTGTGAGAGGTTGACGGATAAACAGTGCACGGCTTAGCTCATCTCTGACTAGTACACCCCCCACTGGAAGGTTGAAACACAGGCAGGCTCACTCTCACCGCTCAGACATTactgagagaggaacagagaggagaagacagacagacgagagagagatgagagggaataAGAGCAGGGTAGTAGCTCGGTGTCACAACAAGAGAAGAGAATCAGACTGCCAGTCATCTTCTAACTCTGTCTGAACAGGGACTTCTTGACTGAAGCTCTGTGTTCTATTGTGCTGTGTAGTCACAGTATAGTGGGGAAAGCCTCACAGAGGGAGTGTGTGGTGTGGTTATTGTATTGCGTTTCagcacagcaagagagagagagtttcctcagaggaaaaggaggagagctGTTTCTGTGTCTAGTCTCCGTACGCCGTCGTGGTCGTTCCCCTGAGTGCACTGCTGTGAGAGGGTTGGCTCTTTAGGGACAGGAAGAGCAGGACTTGCGATGCGACCTGAGCGCTGAGTGGAGTATGCTGCAGACGATTTACGAGAGCGAGTCAAATTTCTCCACCACAACAAACAAGCTCGTTGTCCACCAGCGACTCTTGGACCAGCAGAAGATGCACAACGTTAACTCAGtgGACATTAAGCCAGAGGTACTTTTGGATCCCGTGTCTCCATTGGACCTGCGTACAGACCTGAGGATGCTGGGGCCTGGCTCGGACCCGGGAATGTGGGAGCGTCAGTTGCAGCAGGAGCTGCTCCTCATCCAGAAACAGCAGCAGGTCCAGAAACAGCTGCTGATCAGCGAGTTCCAGAAGCAGCATGAGAATCTGACCCGCCAgcaccaggcccagctccaggagCACCTCAAGGAGCTGCAGGCCatgaagcagcagcaggagctggtggagaaggagaggaggcagcagctgcagcagcagcagagccAGCAGGAGAAGGAGCAGGAGAGACATCGCAGGGAGCAGCATGTCCTCTGTCTCAGCCTCAGGGGCAAGGAGCGCACCAGAGAGAGTCTCACAGGTGCTGTGGCCAGTAATGAGGTGAAGCAGAAACTCCAAGAGTTTCTGTTGAGTAAATCAAACAAGGACCTGTCTACTGCCGGAGCCACACACATGGTCATCCACCACCCCAAGCTCTGGTACACGTCCTCCCACCACACGTCTCTGGACCAGAGTTCTTCTCCCCTGGGAGGCATGTCTCCTGTCTGCCATTAcacactcccctcccctcaggACGGACAGGACGACTTCCCACTGAGGAAAACAGcCTCAGAGCCCAACCTGAAGGTAAAGTCTAGACTGAAGCAGAAGGTagcagagaggaggagtagtCCACTGCTGAAGAGGAAAGACAGCAACGTCATGACCCCCTACAAGAAGAGGGCCCTAGAAATGATGGACTCTACAGCCACTAACAGTGCCCCAGGCTCAGGACCCAGCTCTCCCATCGGAGCCTCCAGCGCCCTGGGGGCCGAGAACgggccctcctctctccccaccaccacaaaaACCGAGCGCTGGCCATCACAGCCTAGGTTATTTCGTCCAGAGGGCTCCATGTCCAACCTTCTGAGCTTATACACGTCTCCCTCCTTACCCAACATCACCCTGGGCCTCTCCGCCACCTCCTCCCAGATCAGCGCTGCCATCGGGCTGAAGGAGAAGACTGGGGAGGTCAGGCATGGTCTACCAGGGCAGCTCCTGGGGCCTGTGCCCATGCCCACGGTGACCTCCATGGAGACCAAGGTGTCCCCCAGCCATCAGGCCCTGCTCCAACACCTCCTTCAGAAGGAGCAGATAAGACGGCAGAagatcctctcctcctctgGTCAAGGCTCCATGCCCACCCACCCCCACTCCCCTCTGGCCATGAAGGACAGGCCCTCCTCCAACAGCAGACCCAAGCTACCCAAGCACCGGCCCCTGAACCGGACCCAGTCAGCCCCTCTGCCCCAGAGCACCCTGGCTCAGCTGGTCATCCAGCAGCAACACCAGCACTTCCTGGAGAAGCAGAAACAATACCAGCAGCAGATCCACATCAATAAGctgctgTCCAAGTCCATCGAGCAACTCCGTCAGCCCAGCTCCCTGGTCAACCCACACCTGCAGgagtcagaggaggaggaggaggacaacacCCGGAGGATGGCGGATGAGAGGATGGACATGCAGGAGGACAGGATGCCCCCTGGTGGCGTGATCCAGAAACACACCCTTCGctccagcagcagcagtggcagcAACAGCTCTCTCGGGGAACTGTCCTCCATCGTAGAGGCCCACCACCGCCTGGGGGTCATAAAGGTCAAAGAGGAGCCAATCGACAGCGAGGACGAGTCCCTGTCCAGTCAGAGCCTAGAGGCGGAGCAGAGGGCCTCACTCCACCAGGTCAAAGGTCAGCTGGTGATAAGAGCTATGATCTGAGAGGGGGCAGAAGATGAAGGAGATCACACACTGCGACATTCAGAGacgcatacgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcagccaacacacacacacagagccgaCTAGGACTCCCCAGGCAGTCCTCTCCCTGCCCTGAGATGTGACGCTGTCTCAGTGAAGTGCAGCCGCACCCCAAACCCCCACCAGACTGACTCTCTGTTTGTGAACTTTGTGAAGTGATCTGTAATGTAAAGTATGTTTCACCGTGCTGTATATAACATGAAGAGAAGATTTACTAGAAGAGTGCTCCTTCTTTTTTTACTTCTAAGGAACTGCTTTGATTGTTTTCAGGTTCTGCTCAATTGACAGAATGtagtatgtatgtatacagtagATTTAGCGTAAGAGAATATTCTAGAAGGGATGGAAAGTTTAACCGTTGTACAATTTATGAATGCCATTTTATGTTCCCATAGTGTAACATTTATGCCATCAATTCACTTCAACTTTGACTTGCTGACTGTTGTTGTTTTATTCAAATGTCATATTCTCCGTCGTTCTCCAAAAAGCTGTGATGTTCTGTGTTCAGTGGTCTCTGAAAATGACATGAAAATAAGGAAGCATGCTCATGTCTGTATGAGAGAGAATGTATTGTTCAACCTTAACACAACACAGCCCACCCTTACGACTGAGTACAGCCAGCCTACACTGGGAATGAGACTGTTTATTGATGTGCAGTACTGCAGAGTGGAGGAGCAAACGCTAAAtcagtggatggatggatggatggatggatggatgatagatagatgatggatggatggagggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126157 lncRNA upstream 127241 8055575 ~ 8138469 (+) True G110673
TU126188 lncRNA upstream 133577 8129761 ~ 8132133 (+) True G110702
TU126144 lncRNA upstream 284561 7912531 ~ 7981149 (+) True G110660
TU126127 lncRNA upstream 361522 7879860 ~ 7904188 (+) True G110646
TU126121 lncRNA upstream 393424 7871758 ~ 7872286 (+) True G110642
TU126449 lncRNA downstream 12181 8339911 ~ 8340121 (+) True G110900
TU126453 lncRNA downstream 16458 8344188 ~ 8344471 (+) True G110904
TU126488 lncRNA downstream 49515 8377245 ~ 8379321 (+) True G110936
TU126539 lncRNA downstream 94230 8421960 ~ 8422251 (+) True G110981
TU126555 lncRNA downstream 136272 8464002 ~ 8466672 (+) True G110991
XM_036961564.1 mRNA upstream 2979 8235903 ~ 8262731 (+) True LOC118944039
XM_036937069.1 mRNA upstream 106674 8138962 ~ 8159036 (+) True LOC118936503
XM_036937064.1 mRNA upstream 106675 8132439 ~ 8159035 (+) False LOC118936503
XM_036937049.1 mRNA downstream 152786 8480516 ~ 8505603 (+) False LOC118936502
XM_036937053.1 mRNA downstream 152786 8480516 ~ 8505603 (+) False LOC118936502
XM_036937056.1 mRNA downstream 152786 8480516 ~ 8505603 (+) False LOC118936502
XM_036937063.1 mRNA downstream 152786 8480516 ~ 8505603 (+) True LOC118936502
XR_005034903.1 mRNA downstream 300041 8627771 ~ 8645961 (+) True LOC118937640
TU126159 other upstream 161790 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 330573 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 559221 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 569468 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 961065 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 709074 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 893755 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 1002539 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 1002539 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 1002539 9330269 ~ 9331616 (+) False G111453

Expression Profile