RNA id: XM_036937049.1


Basic Information

Item Value
RNA id XM_036937049.1
length 4947
RNA type mRNA
GC content 0.49
exon number 29
gene id LOC118936502
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8480516 ~ 8505603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAAATCTCCCAGCTCCCAAAAGAATGATTACATTCATCTGACAATTAGTAAGGGTGGTATTATGTTGAGAGAATAGCTTGTGGATTGTCTAAAAGCCTCATACTGGATTCTCTGAAGGAACGTAGCGTCTGAGTTCATTCACcatggggagagaggatggggacatGCCAGACTCTCTACCAACCATCCCTGAGGAGGTATTTGCAAAAGGCTACCCTAACCTGGCCTTCCATGAGGATAAGAAGCCTCAGGAGCGGATGACAGAGGGGCAGCCAACCGTTGACACGGAGCGCAAGCCAAAGAAGGGCCTCGGAAGGAAGAAAAAAGAACCAGCCAAAGCAGTGGGATTTTTCCAGTTGTTCCGCTACGCTACTGGTTGTGAGGTGCTCCTGATGATAATCGGCCTGCTATGTGCTGCCCTCCACGGGATAGCCCTGCCCCTTATGTGTGTTGTGTTTGGACAGATGACCGACAGCTTTGTACAAAGTGGACAGCAGCTCAACCTTACAGCCAATTTCACTGTGGAGGAGATCAGCGCTTTATTGAACTCAACTGACGGATGTATTCAAATTCCTGGAGTTGATATAGAGGCTCTAATGACTCGACATGCCTATTACTTCGTTGGGATCGGTTGTGCTGTGTTCCTGCTGGGGACCTTTCAGGTGATGTTGTTCTTGTTGACAGCCACCAAACAGACCAAACGGATCCGGGAGAAATACTTCCATGCCATCCTCCACCAACAGATGTCCTGGTTTGATACACACCAGATAGGAGTTCTCAACGTCAGGTTAACAGAtgacatcaacacaATCAACGAAGGCCTTGGAGACAAGATCTGTGTGTTCGTGCAGTTCTTCTGCACCTTCTTGTCAGGGTTCATCATTGGTTTCATCTTCGGCTGGAAGCTAACCCTCGTCATCCTGGCCGTCAGTCCTCTCCTGGCAGGATCAGCTGCCGTCTGGTCCAAAATACTTGCCACCCTGACCAGTAAGGAGCTGTCTGCCTATGCCAAAGCAGGGGCGGTAGCTGAAGAGATACTGGTGGCTATCAGGACAGTTGTGGCTTTCAATGGACAGAAGAAAGCTGTGGAAAGGTATGAAAGAAACTTGGAGGATGCTAAAAACTTTGGAATAAAGAAAGCCATCACCACTAACGTGTCCATGGGCTTCACCCAGTTTGTCATATTTGGGACGTACGCCTTGGCTTTCTGGTACGGGACCAAGCTCTCTGTAGACGAGCCTGAAAACTACACCATTGGAAAAACCATTACAGTCTTCTTCTCTGTGATGATTGGGGCGTTCTCTTTGGGCCAGGGTGCGCCTAACTTGGAAGCCATCGCCAAAGCCCGGGGTGCTGCCTATGAAGTCTACAATACCATTGACCAGCCGCGGCCCATAGACAGCAGTTCAAAGGAAGGTCACAAACCAGACTGTGTGAAAGGAGACATTGAATTCAAGAACATCCACTTCAGCTACCCCTCCAGGAAAGACGTCAAAATTCTTCAAGGAGTGAATCTGACAGTGCCTCGTGGGAAGACCATAGCTCTGGTTGGAGCCAGTGGATGTGGGAAGAGCACCACCATTCAGCTACTGCAGCGCTTTTATGATCCAGACTCAGGAGAGATTACCCTGGATGGTCGGGACATCCGGACCCTGAATGTGAAGTGGCTGAGGGAGAATATGGGTATCGTCAGTCAGGAACCTGTGCTATTCGGAACAACCATTGCAGAAAACATCCGCTATGGCAGAGAGGATGCCACAGATGAGGACATCGAACGGGCTGTGAGAGAGGCCAACGCGTACGACTTCATCTCCAAACTCCCCGATAAGCTGAACACCATGGTGGGGGAGCGGGGAGCCCAGCTCAGTGGAGGACAGAAGCAGAGGATAGCTATCgcccgggccctggtcaaaaacccGAAGATCCTCCTGCTGGACGAGGCCACCTCCGCCCTGGACACCCAGAGTGAGTCGGTCGTTCAGGCCGCTCTGGATAAGGCCAGAGCGGGCCGCACCACAATAGTGATCGCCCACCGCCTGTCCACCATCAGAACTGCTGACGTGATCGCTGGCTTCAGCAACGGAGAGGTGGTGGAGCAGGGAACACACAGGGAACTCATGGCCAAGAAGGGGGTTTACTACTCTCTGGTCATGCAGCAGAGTCAAGGGAAGccagaggaagatgaagaggacCCTGTGGAAGAGGATAACCCTCCTAAATATGAGGATCTGGATTATGTCCTATATGACTCATCTGACATGGATGAGCTGGAAGTGGGAAACGAGGAAGGAATAGAAAACGGCGGCTTTGAAAAGAACTCAATCAGCAGTGGCCGTGTGGAAATGAAACCGACCAGGAGGAAATCTAAGAAGTCCAAGAAGGACAAGAAGAAGGAAAAGAAACCAGATGAAGCTCCAGACATCCCCTTCACCAGAATCCTGGCCTTGAACAAGCCCGAGTGGCCGTACATGTTGGTAGGAACCCTGTCTAGCTTGGTGGGGGGAGCCGTTTATCCCTGTGTCGCCATCATCTTCGCCAAGATCATTGGAGTGTTTTCCGAGGTTGACCCGGAAGTCAAACGACAGAAAACCATGATGTTTTCCCTGCTCTTCCTTCTCATCGGAGGAGTGGCTTTTGTCACCTACTTCCTAAAGGGTTACATGTTTGGAAAATCAGGAGAGCTTCTTACCATGAGGCTGAGGAGGCAGGTATTCCATGCCATGATGAGACAGGAGATTGGATGGTTTGATGACAACAACAATGCAGTGGGAGTTCTAACCACCAGATTGGCCACAGATGCATCTCTGGTTAAAGGGGCGACTGGGTCTAGGTTGGGTCTGGCCACCAACACAGTCTGTGCTCTCACCATCGCCATTGTGGTGGCCTTTATCCACAGCTGGCAGCTCACCCTCCTCATCCTCGCCTGTGTGCCCTTCCTCATTGGAGCCAACTTCATTCAGATGAGGGCAATGGCAGGCCACGCCTCCAAAGACCAGGGTGCCCTGGAGCAGTCTGGGAAGATATCTACAGAGACCGTTGAAAACTTCAAGACAGTTGTTGGATTGACACGGGAGGACGTCTTCTTTCACAAGTTCATGGACAGTCTAGAAAGACCATACCAGAACGGTTTGGTGAAGGCTCCCATCTACGGACTAACATTTGCCGTTGCCCAAGCAATCCCTTACATGGTCAATGCTGCAATCTTCCGCTTCGGGTCCTGGCTTATTGCTCACTGTCACACAGAATATGAAAATGTTTTCCTTGTGTTTTCTGTGATCATATTTGCTGCCATGAACATAGGAGAATCAGCATCTTTTGCTCCTGACTTTGCCAAAGCGAAAGCAGCTGCGGGGAGAATTCTTGGCTTGTTGGAGAAGAAACCAGAGATTGACATTTAcagtgaggagggagagaagccAACGGACTTTGTCGGGGACATTGAGTTCCGAGGGATCCACTTTGCGTACCCGACCCGTCAGAACGTGAGGGTTCTCCAGGGGTTGAACGTGTCAGTGGGGCCTGGTCAGACCCTGGCCCTGGTCGGGGAGAGTGGCTGTGGTAAAAGCACCTCCATACAACTACTGGAGCGCTTCTATAGCCCTGCTGAAGGACAAGTGTTAGTGGATGGGTTGGATACTAAGACCCTGAACCTGTCGTGGCTGAGGTCTCAGCTGGGCCTGGTGTCCCAGGAGCCCATCCTGTTCGACTGCAGCATCTCAGAGAACATCCAGTATGGGGACAACAGCAGAGAGGTCTCTCAGGATGAGATAGAGGAGGCAGCCAAGAACGCCAACATCCATGACTTCATCATGGGCCTGCCAGAGaAATACAATACCAGGGTTGGGGACAAGGGGACCCAGATGTCTGGAGGTCAGAAACAGAGGATAGCCATCGCCAGAGCACTGGTCAGGCAGCCTAAAGTACTGCTGCTGGATGAAGCCACTTCCGCCCTGgacacagagagtgagaagattGTCCAACATGCTTTAGACGCCGCCCGGCAGGGCCGCACCTGCATCGTGATCGCCCACCGCCTGTCTACCATCCAGAACGCAGACCAGATAGCGGTAATTCAGTATGGTCAGGTGACAGAGCAGGGTACACATACTGACCTCATGGCTAAAGGGGGGGCTTACTATGCCCTGGTCAACGCACAGGTCAACCACTAACTCATATTCAGATTGATGTTTTGCAGCGTATGTACTGTTCTGTTGAATGTTGTTTTGTGAGCTCTTTTTATTGAGCTGCACTTCTTAGCCAGGTCCCCCTTGAGAAAGAGGTCTCCTGTCCATAATGGGActtcctggttaaatgaaggttatttataaaaatgtataaaGAATAAGGAATCTATATGGACGATGATATGGCAGCCATAACTCACTTTGAACGGACTGCTAAAATGATGTTCAATTGCATGATACAAACTGTCTCAGTGTCAATTGGTTTGATCACATGTAGGTGGTGCACTGAAATGTAGCCTATTGGGTTACTGTGCTATTGGTTACTCACTGTATTACTCACTTTAGCAGTAATGCTGGAGCACGGACATCAGCACAAATAAGTTTTGATAAGCTGCCTCGAATGAATGAACTGTTCTTGACCATGGCACCTTTCATTGTCTGAAGACAACAGGTACAGTATGTATTTCTATAAGAAAAACAGAAAGACACATTATCACAGTTAAATGACTGGATAAAAGCAGTGACTGGGAAAGGTTGTATACTTGTAAATATGAGAGGTTGATGTTCAGAAGACTGTTGTATGTTATTGTATACTGtgatatttgtattattttaaacAGGGACACTCTCTATGCTCTATACTCTTTATGCTCTAAAAGGCAAAGTATGCATTTGAAGAATATCTATATATTTAAATGAGTACACTATGTAAGGCTGTTACTTGTTTGTAAATATGCATTCAAATAAAACATTACATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126559 lncRNA upstream 13487 8466830 ~ 8467029 (+) True G110994
TU126555 lncRNA upstream 13844 8464002 ~ 8466672 (+) True G110991
TU126539 lncRNA upstream 58265 8421960 ~ 8422251 (+) True G110981
TU126488 lncRNA upstream 101195 8377245 ~ 8379321 (+) True G110936
TU126453 lncRNA upstream 136045 8344188 ~ 8344471 (+) True G110904
TU126587 lncRNA downstream 16437 8522040 ~ 8522763 (+) True G111015
TU126653 lncRNA downstream 36013 8541616 ~ 8541876 (+) True G111067
TU126657 lncRNA downstream 42952 8548555 ~ 8548896 (+) True G111071
TU126782 lncRNA downstream 143136 8648739 ~ 8648943 (+) True G111165
TU126795 lncRNA downstream 160991 8666594 ~ 8667216 (+) True G111178
XM_036937123.1 mRNA upstream 152786 8205100 ~ 8327730 (+) False LOC110514591
XM_036937112.1 mRNA upstream 152786 8265705 ~ 8327730 (+) False LOC110514591
XM_036937110.1 mRNA upstream 152786 8265710 ~ 8327730 (+) False LOC110514591
XM_036937107.1 mRNA upstream 152786 8265713 ~ 8327730 (+) False LOC110514591
XM_036937103.1 mRNA upstream 152786 8265718 ~ 8327730 (+) False LOC110514591
XR_005034903.1 mRNA downstream 122168 8627771 ~ 8645961 (+) True LOC118937640
XM_036937193.1 mRNA downstream 314756 8820359 ~ 9072449 (+) False LOC110518388
XM_036937201.1 mRNA downstream 314757 8820360 ~ 9072449 (+) False LOC110518388
XM_036937197.1 mRNA downstream 314758 8820361 ~ 9072449 (+) False LOC110518388
XM_036937203.1 mRNA downstream 314758 8820361 ~ 9072449 (+) False LOC110518388
TU126159 other upstream 376596 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 545379 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 774027 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 784274 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1175871 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 531201 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 715882 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 824666 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 824666 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 824666 9330269 ~ 9331616 (+) False G111453

Expression Profile