RNA id: XM_036937205.1


Basic Information

Item Value
RNA id XM_036937205.1
length 8124
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC110518388
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8820359 ~ 9072449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTATACATCCTCTATCAGGCCATTATCTCAACCACTCAAGGCTGTCAGAGCAGGAAAACCTCTTATCGGGCACTATttccgTCTGGTAGTGAAGACAGCTCTGAAACTGTTACTGGTGTTTGTGGAGTACACTGAACCCAACACTGCCCTGCTCATCCATGCTGTCAACACCGTGGACACCAAGAGAGGCTGTAAGCTGTGGTCCAATGCCATGGAGATTCTGGAGGAGAAGGATGGGGTGGACACAGAGCTGCTGGTGTATGCCATGACCCTCATCAACAAGactcTAGCGGGCCTGCCTGACCAGGACTCATTCTATGACGTGGTGGACTGTTTGGAGGAGCAGGGCATGGAGGCCATGTCTCAGAGACACCGTAGCAGGAAGGGAACAGACCTGGACCTCATGGAGCAGTTTAACATCTACGAGACTGCTCTGCGCCATGAGGACGGGGACGACGAGAGCCAGCCACCTACCGTGGGTCGGAAGAACCGGCGGCGTGCCAGCGTGGGGGGTACCAACGACCGGCGAGGCCTGGAGAGGAGACGCAGCCGGAGACACTccctccagaacgggagaggacTCACCTCAGCCCCCGCTTCCCCCAGCAGCCCTCACTCTCACGGAGGACACAACGGTAGCTTCCTGCCCTTCGGAGGCCAGGGCATCGACGACGTCAGCGAAAGagaggaggaagaggaggaggaggaagaggaggaggaggaggaggatgaggaagatgatGAGAGTCATGATATCACAGAGACCACTAGAAAGGGCTTCCACAGCAGCCAAACAGCTGTATTGTATACATCTAGAGCACCCGTTAGTGCTGGAAGCCGACACATAGGCCACGTCATGGCGCTCCCTGGCAGGTCCCAGGGTGTAGCCAGCGCCAGCGCCCCCACCACCCCTGTACACCGCTCCCAGGGTGTTGCCAGCGCCCCCACCACCCCTGTACACCGCACCTTTGCCACATCAGGGgcaccacagctggactccaagtCTGACAGACCTTCTCTGGGGAGCTTGTTGTCCTCCTCCTACAGACAACACCAGGAGTCtctgactgcagagagagagaggaggagacaagagAGGGAGGAACGACTGCTGAAAatcgagagggaggagaggacccGCTTCAATCGGGATTACATGGACAAGAGGGAAGAGACAAGACAGGCCAGAGAAGAGAGATATAAGTGCGTTGAGAGGCTGGCAGCAGAGGagtatgagaaagagagagagcgcacgaGAGCGCCACCCAGGGGGCGCACAGAGATCACCCTGAGCCTGAGCCCCACCCCCTCCAGTCGCTCCGCCTCCCCCCGCTGTGCCACGCCCTCCTCCATCGCCTCTCCGGAAGACGCTGGCACCATTCCATCCCAGACATCCCAGACGCAGGGAAGTGAAGTAGACGTAGAGCCAAGCCGTGACCTTCAGACTAGAACTACAAGTCCAGCGCCAGAGTTAATAGTATCAGGACCTTCTCCAGAACCCACAGAGCCCCCCTCCCAAACCCCCTTCCAAACTCCCCCGGCGCCAGCCGAGgagcaggcagagacagagacgcaGACAGAGAAGCAGGAAGTAGCTGAAGTTGAGTCCAAGCAGGAAGTACTAGAGCTAGTGGAGTTAGCGGTAGATGAACAGACACAGGGTAAAGAGCAAGAAgaaagtgaggaggaggaggaggagggtaaggaggaagagagacagtcagggaatgaggtagagggagaagagaaggtagaggtagagggagaagaggtggagaTAGAAGACGTAGAAGTggtagagatagaggtggaggaggagggagagagggagcaggctgcgtcggaggagagggaggtggaggagaggctGGTCCTCCTcagtgagaaggagaggcagaatgAGGAAGTGAATGAGAAGGACAACTGTTCTGCCTCCAGTATCTCCTCAGCCAGTAGcactctggagagagaggagagggaggagaaagtcaacagcaaccttgaaCCAGGCCAGTGCATTAAGGAGGAAGACGTGAACGGGCAGTGCAGCAAGATCCTCAACAGCAAGCGCTTCATGCTGGATATGCTCTATGCCCAGAACAAGACCACTGCCGACGAGGACGAAGAGAAggcgggagagacagaacagacggAGAAATGCAAAGAGGGGATGGAGACGTCATCGCTAGAGGGTCAGGACGGGTCGTCGGTGGCCAGCTTAGCCAGTCGTATCTCTACACTGGAGGCCAGCAGGCAGGCCTGCGAGGAGAACGTCAAGAAGATGGAGGTCCAACACCTGGAGAACCAGGGGAGCGTCAGGGCCGCGGCCGAGAAATTTGGAGACCTTGTTAAAAGCCTTGTGTCGCCTCACGAGCTGGAGGCATTGGAGAAACAGCAGCAAGGGCAGCTTCAACCTGATAAAGACAAAGCTCCTCCGGCcccgtcctcctctcccctacctcctaAGAAGGAGTCAGATTATATCTGGGACCAGCTGATGGCAGCCCCCAGGGAGCTGCGGATTAAAGAGATGGACTTTACAGACCTGGCAGACGAGGATGATCTGGACATCTTAGACGTGGACAGTGTGCTGATGGGCTCCAGTGACCTGAtgatccctccccctcctccctgtctctccaccctgccccctccccctcccctgggCCTGTTCGGCTGCCCCCCGCCCCCTCCTGTCCCTGGCATGATGCCCCCTCCCCCGCGCTTCATGCCCCCCGGACCCACCCAGCCCTACCCGGGGTCCCCCCAGCTGAGCCGAGGGACAGGGGAGCCCCCTCTGTttcaaaagaagaagaagactatCCGTCTCTTCTGGAACGAGGTAAGGCCCATGGACGGCCAGTACAGGAACCACAAGCGTTGTAGAGAGTCTCTCTGGTCCAAACTGGAGCCGGTCAAAGTGGACACGTCCAAGCTGGAACACCTGTTTGAAACCAAGTCCAAGGAGCTGCCTGTTACCAAGAAAACAGCAGTGGATGGGAAACGACAAGAGATTATTGTCCTGGACTCCAAACGGAGCAATGCCATCAACATCGGGCTGACCGTCCTCCCCCCTCCCCGCACCATCAAGACAGCCATCCTCAACTTCGACGAGTACGCTTTGAACAAGGAGGGGATCGAGAAAATCCTGACGATGATCCCGACggaggaggagaagcagaggATCCAGGATGCTCAGCTGGTGAACCCTGACGTCCCCCTGGGATCAGCAGAGCAGTTCCTCCTCACCCTGTCCTCCATCACAGAGCTGTCCGCCCGGCTGCAGCTCTGGGCCTTCAAGATGGACTACGAGGTCACGGAGAAGGAAGTGGCAGAGCCTCTGCAGGATCTTAAGGAAGGGATGGACCAACTGGAGAAGAACAAGACGCTGCGTTACATCCTGTCCACGCTGCTGGCTATAGGCAACTTCCTTAACGGATCCAACGCGAAGGGCTTTGAGCTGGGTTACCTGGAGAAGGTTCCGGAGGTAAAGGACACGGTTCATAAGCAGTCTCTACTGCACCATGCCTGTTCCATTGTGGTGGAGAAGTTTCCAGACAGCTCAGACCTGTACTCTGAGATAGGAGCCATCACCCGCTCGGCTAAGGTGGACTTCGACCAGCTCCAAGACAACCTGAGCCAGATGGAGCGACGCTGCAAAGCATCGTGGGACCACCTCAAGGTCATCGCCAAGCACGAGATGAAGCCTGCGCTCAAACAGAAGATGTCTGACTTCCTAAAGGACTGTGCAGAGAGAATCATCATCTTGAAGATAGTCCATCGGAGAATTATCAACCGGTTCCATGCCTTCCTGTTGTTCCTGGGCCATCCAGCGTACGCTGTGCGGGAGGTCAGCATCCACCGCTTCAGTAAGATCCTCAGTGAGTTTGCCCTGGAGTACCGGACAACACGGGAACGCGTCCTGCAACAGAAACAGAAGAGGGCCAACCACAGAGAGAGGAACAAGACCAGAGGAAAGATGATCACAGATAGTGAGGATGAAGAGGATGGTGAgGATGGAAAGTTTGGCGGTAGCGCCCCGGGGCCTGTAAGCCAGGAGGGCGTGCTGACGCAGGGTCTGCAGTACGCTGAGGATGCAGCGGAGCATGAGAACATGAAGGCAGTGCTGAAGAGCAGCTTGCAGGGCTGCAGTGACAGTGGAGCGTCCACCGTGCCAGGCCTACGTACACGCACCAGAGCCAGCAGGCCAGGCCGTGTGGGTCCTTGGGGCTCATCAGTGATTGAAGACCCACCTAATTGCACAGAGACAGACGCTGCAGATGAGATCATGGAGCGCATCGTCAGGTCAGCCACTCAGGGGCCCAGGACACGGACAGAGCCTCGCGAGAGGAAGAGGTCCAGAGCCAACCGCAAGTCACTGAGAAGAACACTGAAAAGCGGTCTGACGCCAGAGGAGGCCAATGCCTTGGGGTTGTCCAGTGGTTCAGAGATGGCTGTGTGACAGGAAGAGAAGTAGAGCTGGATCcggcagcacagcacacacagacacctggGAAACCCTCTTACCGCCCGCCCCGCCCTtcactgacccctgacctctaacccttgctcatccagccagccagtcaactgCTGCACCATAGCTTCGCTTGGTCTTTCCCCTGGTTCAGCTTTATGATGACTGTAGCTCATCTTCCTGTCTGTGGTTTGTGCAGGTAGCTGTGACACAGTGTTCCACCTGGTTAAGATGGTAAACAATGTTCAGGAAGAGACCATGAGGAATATGGTCCTCATCCAGGATAATAGATGGTTTTCAGTGGAACAAAGTGGTATTCGTATAGGGGCAGTTAAAGGGGTTCAGTGATCCAGCTGACtcagctccacacacacacactcaggtaaAGTTCAGCATCCAAACCACTACACTATGCTGCTGTGCCGACTTGAGTGTTTCTTAATGGTGTTGTTCCAATCAGTTGTTTCTCCTAACCTTTGAATATGAGGCTGAGGCCTTTGAGGAACAGCTCACATCCCAACTGTAAGTCTTAATCACTTGATGAAGCCCACAGTGACCACATGACTAGTGGTGAATCTCAGttgtatttccttgattcctcgtgTCTTCTATCCTCACCTGTCTACACAAGGCATTGGAGGACTAGATCTGAGGTTCGTCCTCCCTAACCTTTTCCTCAATTGAGATTCACCCTATGACTGAAAGATACAAACTGAGACTTACCTACACAGAAGACATTTAGCCTCAGGACTTCTAAAGGGAGGGACTTGCGAGTGCTTGAATCACTGTGGACTTGTGTCTGAACCAAAAAGGCCTCGGAGTTGAATAGTAAAGAAGTTAGCATTGACGCTAAATAAGTTAGCATTGACGCTAAATAAGTTAGCATTGACGCTAAATTAGTTAGCATCGATGCTAAATAAGTTAGCATTGATGTTAAAGACGTTAGCATTGATGTTAAAGACGTTAGCATTGATGTTATCTATCCCCACTTATGATGAGCTtgtgtgttgggcttggtgtcaGATAGTATTTTTAGTTTGAACAATTTttgtttatataaaaaaaaaaaaatgtctgtgtCCACAGGCTGTTTTGTTCTACTATACTACTGTGGTAGTTTTTTGGGTTTTAAAATACTTTAATGTGTGAGAAAAAGGTGCTCAGAGAAGGAATATTTGCACTGGATGTAGAAGTTGGATATTTAGAGGAAAGGAAGGGGAAATCCTTGACACACACTGATGTACCAATCAGATATCAGATGAATGAAAGAATCCCCCAGACAGAACCAATAACGAAACAGTAGCACAACTGATTATACACTCTAATTTCAGAGGAAACGTGAACAGATTCCTTTGACTTCTGCAAACTAAAATGTTTCCAATTTTGCATGTTGTTGATTCAGTTGGATTTTATACCGATGGAACAAACTGGAATTCCAAGAGGACACACCATGATGTGTTAAGAGGGAAGGTATCATTTACTACATACAATTGAATTACTGGTTTCCACTTTTAAAAAACACATAGCATATCAGAGTCATCAACGTTGGTGAGAACAGTCTGTGAGCTGACAAGTGTACAGAAGGGACGATGCTACTGGGTCCAGACAGACTGACGTCTGTCAATCACGCGTAGCGAATGTTACAGCTTTAGCCTATAGGCCTGCCTACAACATACATGTTCCAGCTTTAACCTATAGGCCTGCCTAGTACCTACAATTACACACGTGTTGCATGCATGACACCAGTGTTACGCAAGCTCCTGCTGTTGTTCGCTGCAAAGCCTTCTTCTATGGTTGAGACATACTTATTGTGGAGTGGTAGAACCGACAGGGAGATATATTTACACTAGTTACATTTACgtactctctctttactctctgtgTCAAAGAGTTAGGCAACATTTAACAATTGTTTAAAAAAGTAAGAGATGAATAATTGGTTATTATAGAAAAACGATATGAGCTTCAACTGAATGAGTGCCTTTTATAGACAAGTCTATTTATTCAGTAATGTTCAGGGAGATATTTGTTACAGAAAATGTTACTGTGTGTAATGAAAGGACTTCCTCCTTAGGTCAATTCAACAGCTGTGACTTCCTGTTTTCATTCTTTCCTAGATGAATACATGTCAGTACTATGTTCCATGGCTTTATGTCTTGGAAACAGTTCTCCTCTTCCATTTGCACATTGCAGTTTTATTTCGAATCACAACTAAACTAGGGTTATAGCTAATTGTCTAATGACAATATTTCCATTttagcagttttgtcacaaaaaaatgATCTACAAAAAGATATTAGTTGTTTCCATTTGCCTTAATGTAGAATAAGGGCATATAGTATATCTGAACGTTCCTACACTGTTGACTTTTATTGAGGTGTAGTGGTTACAGTCAGCTAGATAGCTCGTTTTTTAAAGTGCATAATTCCAGTTTACATTTGGAATTGTGTAGAGAGTTGTATGATGATTCTACACAGTCACAAACATTCACTGTGATGGAAACAGCCATTGTCGACTAAACATGAAAGAATATATGCTTGCAGCAACACAAGCCACAACAAAACAGTCACACACCTACAAGTATACGTCTTTCTCATGGAGAACTTACAATTTGGTATGAAACTATCCAGCACCTTATACACCATTTGTAGCATGCGTCTTTCATTGAGGAAAAGCAGAACATTAACAGTGAGAAAGTATATTCTTTCAGCCTTTTTCTCAGATGGTCATTTGGAGTATTGTAACTCTGAGTACATGTAAAGTAATAATGGGGGAAGAATGCTGTAAAATGATGTAAATGTCACAACGATGTGTTTTATGTCTTTCACTTGTTGGTATTTTGTATAGAATAGTGTATTATAGGTTAAACAAAGCAGTGTTATTCTATGGAAATTGTAATTTAAGTGAAAACCAAACCATGCATGGTTTTAAAAAATGTCTACAGATGAGGCGTGTCACGTCATGTTATGGATAAAgggagatttgatttgatttgaatgctcAGAGGCTTTAGCGTTTGTTATGTTATATTGTTTTCCCTCCCCACATGACTTGAAACACATTAGGATAGACGGAGTGGTCGATGTAACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTACCACCTAGGActggattcaatctgtatcgctgaactTCAGCGTTTTAGCGTGATTGAAAATGTTCCTGCATTAGCATagactgcattcatggtaaacactgcatatgtcggctccATCTGAAAGGATGccatctgtaacgcttcagcccCTAGTACTCCTATGGAACCTTCAGCAGCCTTTCATTACATTGCACTCAATAAAACAtggagtgtgtcccaaatggcaccctattccctatagagtgcactacttcttcttcttttttttttaccaggacccatagagtccaaaagtagtgtactgtgtagggaatggggtgccatttgggatgcagaccatgCTTTCTGTGATTGGCTATATTATCTCCTTCTCCCCCACTGCTGTACTGTAAGTCAGTGTGGGACTTGGACACAAGCACATCCAGACTCAGTGAGCTTTTCTTGCGTCTTCGCCCCTCTAACAACAACTGTATGTATGAACATCTGGCAATAAAAGATCTCTTAAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126994 lncRNA upstream 14 9014476 ~ 9014879 (+) True G111349
TU126993 lncRNA upstream 469 9014050 ~ 9014424 (+) True G111348
TU126989 lncRNA upstream 7457 9007227 ~ 9007436 (+) True G111344
TU126987 lncRNA upstream 8795 9005625 ~ 9006098 (+) True G111342
TU126985 lncRNA upstream 10718 9003903 ~ 9004175 (+) True G111340
TU127027 lncRNA downstream 24385 9096834 ~ 9098911 (+) True LOC110520725
TU126882 lncRNA downstream 44084 9116533 ~ 9121412 (+) False G111254
TU126884 lncRNA downstream 47481 9119930 ~ 9124215 (+) False G111254
TU126885 lncRNA downstream 47481 9119930 ~ 9124215 (+) False G111254
TU126883 lncRNA downstream 51023 9123472 ~ 9123997 (+) True G111254
XR_005034903.1 mRNA upstream 368932 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 509290 8480516 ~ 8505603 (+) False LOC118936502
XM_036937224.1 mRNA downstream 18111 9090560 ~ 9097627 (+) False LOC110520725
XM_036937231.1 mRNA downstream 18111 9090560 ~ 9101359 (+) False LOC110520725
XM_036937243.1 mRNA downstream 31063 9103512 ~ 9105845 (+) True LOC110506654
XM_021598146.2 mRNA downstream 33855 9106304 ~ 9110163 (+) False LOC110520726
XR_005034916.1 mRNA downstream 33855 9106304 ~ 9110772 (+) True LOC110520726
TU126159 other upstream 910973 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1079756 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1308404 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1318651 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1710248 7303028 ~ 7304645 (+) True pde11al
TU127103 other downstream 149036 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 257820 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 257820 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 257820 9330269 ~ 9331616 (+) False G111453
TU127145 other downstream 257820 9330269 ~ 9331616 (+) False G111453

Expression Profile