RNA id: TU126892


Basic Information

Item Value
RNA id TU126892
length 420
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC110518388
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8820359 ~ 9072449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagcgcacgaGAGCGCCACCCAGGGGGCGCACAGAGATCACCCTGAGCCTGAGCCCCACCCCCTCCAGTCGCTCCGCCTCCCCCCGCTGTGCCACGCCCTCCTCCATCGCCTCTCCGGAAGACGCTGGCACCATTCCATCCCAGACATCCCAGACGCAGGGAAGTGAAGTAGACGTAGAGCCAAGCCGTGACCTTCAGACTAGAACTACAAGTCCAGCGCCAGAGTTAATAGTATCAGGACCTTCTCCAGAACCCACAGAGCCCCCCTCCCAAACCCCCTTCCAAACTCCCCCGGCGCCAGCCGAGgagcaggcagagacagagacgcaGACAGAGAAGCAGGAAGTAGCTGAAGTTGAGTCCAAGCAGGAAGTACTAGAGCTAGTGGAGTTAGCGGTAGATGAACAGACACAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127004 lncRNA upstream 2857 9030026 ~ 9030239 (+) True G111358
TU126995 lncRNA upstream 17375 9015312 ~ 9015721 (+) True G111350
TU126994 lncRNA upstream 18217 9014476 ~ 9014879 (+) True G111349
TU126993 lncRNA upstream 18672 9014050 ~ 9014424 (+) True G111348
TU126989 lncRNA upstream 25660 9007227 ~ 9007436 (+) True G111344
TU127005 lncRNA downstream 1691 9038323 ~ 9038528 (+) True G111359
TU127011 lncRNA downstream 18652 9055284 ~ 9055822 (+) True G111365
TU127013 lncRNA downstream 28914 9065546 ~ 9065912 (+) True G111367
TU127014 lncRNA downstream 29749 9066381 ~ 9066666 (+) True G111368
TU126886 lncRNA downstream 33757 9070389 ~ 9072449 (+) True LOC110518388
XR_005034903.1 mRNA upstream 387135 8627771 ~ 8645961 (+) True LOC118937640
XM_036937049.1 mRNA upstream 527493 8480516 ~ 8505603 (+) False LOC118936502
XM_036937224.1 mRNA downstream 53928 9090560 ~ 9097627 (+) False LOC110520725
XM_036937231.1 mRNA downstream 53928 9090560 ~ 9101359 (+) False LOC110520725
XM_036937243.1 mRNA downstream 66880 9103512 ~ 9105845 (+) True LOC110506654
XM_021598146.2 mRNA downstream 69672 9106304 ~ 9110163 (+) False LOC110520726
XR_005034916.1 mRNA downstream 69672 9106304 ~ 9110772 (+) True LOC110520726
TU126159 other upstream 929176 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1097959 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1326607 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1336854 7615959 ~ 7696242 (+) False creb5b
TU125259 other upstream 1728451 7303028 ~ 7304645 (+) True pde11al
TU126891 other downstream 172 9036804 ~ 9037901 (+) False LOC110518388
TU127103 other downstream 184853 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 293637 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 293637 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 293637 9330269 ~ 9331616 (+) False G111453

Expression Profile