RNA id: XM_036937281.1


Basic Information

Item Value
RNA id XM_036937281.1
length 2048
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC118937651
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9212074 ~ 9216058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCAAAAGAGAATCACAAGACGGAGAGATGTGTCTGTACTTAAAACTGTGTCTCTCTATGCTTTTACAGACTAGACTTGGACTCCAGTCATCTGACCATAGGCCCACAAGAATCTTTGCTTCAATTGGAGACAGTGTGAGTTTACCATGTGGTACATCCTACATCAATTCCTGCTCCTCTGTTACCTGGAGTATAGTGAAAGATGGGTTTCCTAACCAATTAGAACTATCAGGCAAGGTGAAAACGGATGGTCCAAACTCAGGAAGAGCCAGTCGACTGAAAGTGGGACATGACTGCTCTCTACATATTCAACCTCTTGAAATAGATGATGGAAGACTTTACACCTGTGAAGATGGGGATACCAGTTCAAGTGTTTCTCTTCAGCTTCTCAACAGCCTTGTCCCACAATGCAACCAAAGTGAAATAAAGCTGAATTGGCTGAATGAGGCCAatacagtgctacagggagagagaTTTCAAACCGAACGTTCATCTGCTTGCCTCTCTACGCTGACCATCCGAGGTGTCAGGAAGACAGACCATCACAGGAAGTGGCGGTGTCAACtgattgaaggagaggttgtgaaGACGTCCCTCAGCTATACCACAGAAATTACAGgagGTATAGAGGAAGTGTTTGTCGCAGTGGGTGAGTCAGTATCACTTCCCTGTGCCACCCACTCCTCTCTCGAGGTGGGCAGCAGATTCCAGTGGACTCTGGGTCAAAGGTCACTGTCCAGTCTGTCTCGGTCAGGCGATGTCTCAGCTGGAACTCAGGGTCACCTTCCTGCATCTCACATCAGCCAAGACGGGTCTTTGGTCATCAGCAATGTGAAAACACTGCATTCTGGGCTCTACAACTGCTCGCAACAGAACAGAATCTTACTACACACTCTGGATGTATCTGCAGAGCATGCTACCACAGACGGAAACAATCTCACCCTGACCTGCTCACTCACCTGTGTGGAAGATTGTGGAGACTTCAATTTATCCTGGATTCACAGTGGCCAAGATGGGTTGCAGAGTGGCCCTATAGGACATAACAACACCCTCATCTCCAAACTCTTCCTCCCTGACCGCCAGGGCACAGAGAAGATAGCCTGCGCCGTGCTCAGAGAGGGGGTTGAAATGGCTGTAAAGGAGTGGACCATCCAGAGAGGTCGTGTTCTACCTGCAGTGGGATGGTCAGTCCTTCTGCTACTGCTGCTCTGTGCTGTTGGAGGGGGCGTGTATTGGAAGAGGCAGGGCAAGGGAAGTGCTGCTCAAGGAGAAGAACAGCAGACAACTGTTGCAATGACTCATCTCTATGACGAGATTCAAGATCAACCAATTCAACCTTCCGGAGTAACCAACAACAGTTTCTATGATCTTCTGCAGGCTGGGAACTGAGTGTAATGTCATGTCCTCTATCTTTAGGCTGTTAGTTGAGTTTTAAATCTAATTTGACTACTTTGTACTTGGCATTGTTTTGTGGTTTGGATTTCCCTTTATACGTGTCACCATGACATCAAGTCTATGCAGGTTGTTTTTTATGGtggaaataaattcataaaaagaAAATAACCTCTATAGAATATCACCAGTTACTACAGTTAAAAACCCCGACATGAGTTGGTTACAGGAACACATTCAGTATGACTCCTCAGTGTGGGGGGTTGATGGCTAAGTCATCCCACCTCCTGTCTTGAACATCACTCTGCTGACTTTCACATCCCACATGAAACCTGGTAGCTTCTCTTCAGCAGTGTAAAACTCTGTAGATGTATGGGACTGAGACAAGACACATCCCACATGAAACCTGGTACCTTCTCTTCAGCAGTGTAAAACTCTGTAGATGTATGGGACTGAGACAAGACACATAACACATGAGAGTGAACAGATAAGTGTGTTTATTTAATACAGGATGGCAGTGTGTGAGCATTAGCAATACAAGTAAAAACCCCAGAAcagcatgtctctctgtctggaacAGCTCCCAACTACACATCATTTGGTGTAGAAAAGCGTCAGCAAAAGTTGGTCCACCATGGGGTCACAAATAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127064 lncRNA upstream 15578 9196245 ~ 9196496 (+) True G111398
TU127050 lncRNA upstream 40503 9171328 ~ 9171571 (+) True G111394
TU127042 lncRNA upstream 62996 9148856 ~ 9149078 (+) True G111386
TU127040 lncRNA upstream 66032 9145710 ~ 9146042 (+) True G111384
TU126888 lncRNA upstream 67168 9138410 ~ 9144906 (+) True G111257
TU127100 lncRNA downstream 3587 9218727 ~ 9223905 (+) True G111422
TU127112 lncRNA downstream 20209 9235349 ~ 9235558 (+) True G111433
TU127079 lncRNA downstream 30305 9245445 ~ 9247633 (+) True G111405
TU127092 lncRNA downstream 60871 9276011 ~ 9276847 (+) True G111414
TU127095 lncRNA downstream 62392 9277532 ~ 9278357 (+) True G111417
XM_036937271.1 mRNA upstream 22871 9175670 ~ 9189203 (+) True LOC110535199
XM_036937254.1 mRNA upstream 43123 9149173 ~ 9168951 (+) False LOC110534026
XM_036937258.1 mRNA upstream 43123 9149173 ~ 9168951 (+) False LOC110534026
XM_036937260.1 mRNA upstream 43123 9149173 ~ 9168951 (+) True LOC110534026
XR_005034916.1 mRNA upstream 101302 9106304 ~ 9110772 (+) True LOC110520726
XM_021620097.2 mRNA downstream 6278 9221418 ~ 9228300 (+) False LOC110535224
XM_036937288.1 mRNA downstream 24756 9239896 ~ 9243612 (+) False LOC110535231
XM_036937290.1 mRNA downstream 24810 9239950 ~ 9243612 (+) True LOC110535231
XM_021598151.2 mRNA downstream 94844 9309984 ~ 9315691 (+) True LOC110520731
XM_036961592.1 mRNA downstream 139882 9355022 ~ 9358422 (+) True LOC118944051
TU126891 other upstream 174173 9036804 ~ 9037901 (+) False LOC110518388
TU126159 other upstream 1108154 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1276937 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1505585 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1515832 7615959 ~ 7696242 (+) False creb5b
TU127103 other downstream 6345 9221485 ~ 9229025 (+) True LOC110535224
TU127136 other downstream 115129 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 115129 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 115129 9330269 ~ 9331616 (+) False G111453
TU127145 other downstream 115129 9330269 ~ 9331616 (+) False G111453

Expression Profile