RNA id: XM_021620097.2


Basic Information

Item Value
RNA id XM_021620097.2
length 940
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC110535224
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9221418 ~ 9229025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAACTCCCCACACTTCCTCTTCTGTCACAAAATACAGATACATACTTTACACTTTCAGTGTTCATGACACAACGCTCAGCCACCCCTGGTCCCTTTAACTACTCTATGATCCACCAAATAACAGCAGATTGACATGGACAAACATTTGCAAGGAGGGAAAGCATTTGGATTCCTCAAGTCTCAGCAGGATGTGAAACTGAACTCCATCAATGAGGTTTTTCTCACAGATCCTAAATATGCAGAGGAGGAGGACCTCAGCTCAAAACTGGAAATGTTTAAAAACAAATACATGGAATTTGATCTCAATGACCAAGGAGACATTGACATGATGGGGCTGAAGCGCATGTTGGAGAAGCTGGGTGTGGCAAAGACTCACTTGGAGCTGAAAAAGATGATGTCAGATGTGGTTGGCGGTGCTGCACGAGACACGTTCTGTTACACAGACTTTCTCAATATGATGCTAGGGAAGAGGAATTCCATACTCCGACTGATCTTGATGTTTGAGGAGAAAGGGAAAGACCAGGAGCCCAAAGAGAGTGGACCACCGCAACGCAAgactttttcagatctgccctgAAGGCAATTACGTTATGGATCCAATCTGTTCATATAAAAACTGAATGTCAAATGAACTGGGTTATACAGGTTTCATTGTAAGGAATAAAGAAAGGTTTGATTGATCCATAGGCTTGTCCATTTGTTGGTGAAAAACGTGTGTGCAGCTGCAGAACCTCATATCAAGCTCTTGATCGAATATACTTAACAAAGTATATCAATTGTCAGCATTTCTGATAAAATGATAGAATCCCATAACAGATTTGAGTGTTTGTGTAATGGTGAAAAACATCACTCAAAGTGAAAGGTAATCAAAGTGAAAAGTAAAATTATATATTCCATTCCTTTCTATGTAAGTATTGAATAAAAATAGAGTAAACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127058 lncRNA upstream 5360 9214665 ~ 9216058 (+) True LOC118937651
TU127064 lncRNA upstream 24922 9196245 ~ 9196496 (+) True G111398
TU127050 lncRNA upstream 49847 9171328 ~ 9171571 (+) True G111394
TU127042 lncRNA upstream 72340 9148856 ~ 9149078 (+) True G111386
TU127040 lncRNA upstream 75376 9145710 ~ 9146042 (+) True G111384
TU127112 lncRNA downstream 7049 9235349 ~ 9235558 (+) True G111433
TU127079 lncRNA downstream 17145 9245445 ~ 9247633 (+) True G111405
TU127092 lncRNA downstream 47711 9276011 ~ 9276847 (+) True G111414
TU127095 lncRNA downstream 49232 9277532 ~ 9278357 (+) True G111417
TU127072 lncRNA downstream 56220 9284520 ~ 9285599 (+) False G111404
XM_036937281.1 mRNA upstream 6278 9212074 ~ 9215140 (+) False LOC118937651
XM_036937271.1 mRNA upstream 32215 9175670 ~ 9189203 (+) True LOC110535199
XM_036937254.1 mRNA upstream 52467 9149173 ~ 9168951 (+) False LOC110534026
XM_036937258.1 mRNA upstream 52467 9149173 ~ 9168951 (+) False LOC110534026
XM_036937260.1 mRNA upstream 52467 9149173 ~ 9168951 (+) True LOC110534026
XM_036937288.1 mRNA downstream 11596 9239896 ~ 9243612 (+) False LOC110535231
XM_036937290.1 mRNA downstream 11650 9239950 ~ 9243612 (+) True LOC110535231
XM_021598151.2 mRNA downstream 81684 9309984 ~ 9315691 (+) True LOC110520731
XM_036961592.1 mRNA downstream 126722 9355022 ~ 9358422 (+) True LOC118944051
XM_036937367.1 mRNA downstream 216890 9445190 ~ 9482500 (+) False LOC110519250
TU126891 other upstream 183517 9036804 ~ 9037901 (+) False LOC110518388
TU126159 other upstream 1117498 8073366 ~ 8103920 (+) True G110674
TU126124 other upstream 1286281 7898596 ~ 7935137 (+) True G110644
TU125754 other upstream 1514929 7701982 ~ 7706489 (+) True creb5b
TU125753 other upstream 1525176 7615959 ~ 7696242 (+) False creb5b
TU127136 other downstream 101969 9330269 ~ 9331616 (+) False G111453
TU127140 other downstream 101969 9330269 ~ 9331616 (+) False G111453
TU127143 other downstream 101969 9330269 ~ 9331616 (+) False G111453
TU127145 other downstream 101969 9330269 ~ 9331616 (+) False G111453
TU127146 other downstream 101969 9330269 ~ 9331616 (+) False G111453

Expression Profile