RNA id: XM_036937361.1


Basic Information

Item Value
RNA id XM_036937361.1
length 2311
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110512181
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9392946 ~ 9403493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTgtgtagaggcagagggaggctAACAGCACACTGAGGGGAACCCAGAGGAAACAGACGCTCACAATATAGCCAGCCAGGAGTGAAGGAGGGGTccaccttgagagagagagagagagaggtgagacagagaaagagagaggaagagagagagagagagagaggtggagagaagcagagaaagagcgagagatatCAAATAGTGATTTAATCTGAGTGTCTTGATCTCTTTTGTCCTCATGTCCAAGGATTAAGTAGAGGATCTACAATACTGGGGGGATCTGGTCTTTCTACAGGTCTCTATATGAGAgaggagtctcccacctgtcttGTAGATCTGGACTGATGTCTTTTACGATGGTGCGTACGGCTCCCCCAAGCCGCTTCCTCTTCTCCGACATCAGCATGATGtcagaggacgaggaggagaacGGCGGCAGCGAGAGCTCGGGCTCCGACTCCCAGAAGTCCTCCTTCCGTCTCAACGGCGGCTCCAACGGGTTTCAGATCAAGGTGGGAAGCAGGAAGAGGAAGTTCTGCGGAGTTGCCGGGAGGCTGGCGGGGCCCCCGATGGTGGCAGGGGCCCCGGTGGTGGAGGTGCGGCAGCGGAACGTGGCAAACGCTCGAGAGAGGGACCGCACCAACAGCGTGAACACGGCCTTCACTGCCCTGAGGACCCTCATCCCCACCGAGCCAGCTGACAGGAAGCTGTCCAAGATCGAGACTCTGCGGCTGGCGTCCAGCTACATCTCCCACCTGGGTAATGTGCTGCTGGTGGGCGAGGCGTGTGGGGATGGGCAGCCGTGCCACACCTCCACACCCCCATTCCACCACCACACCCTCCACAGTCTCAGCCCCTCGCCCGGCCGGGGCTCAGAGaaccagcccaaacacatctgTACTTTCTGCCTCAGCAAGCAGAGGAAAATGaacaaagacagagacagaaaaacaactgTCAGAAGATAACGCCTGAAGACCAGAAACATCCAGAGGATAAATATCCAACACTCTTGTGAAGGATCAGTTCAATTAGCCTATTCTTCAAATGAAAGTTGTAATTACAGTTGTGTacttaataataatacaatatttgtatcatgtgtatatatatatatatatatgtatatattgaaAGCACAATGGTGTATTTAAGACCATGGAGGATTTGATATGTGTGTTAAGGGAGGATGTGGCAGCAAAAAGTCCATGAAACATGGGATGATATATAGACTCATGACCATTTAGTTAATATCTATCCTTAAACTACTGGGCATTATAATGAACAGGCCGAGGAGGACAGCTCTTTCAACGGGTGCAGCCCAAATGGCActgtattccctatattgtgcactacttggGCTCTGGACACACAAATGACTCGTTACTGAAACTTCCACGGACTTCAGAGCACCTAAATATGACATAACACCACTCTAGAACCCTCCCTGGACTGTATGCCCTTCACTCTCATCAATACGTGCTGGATGTTCATGTTATTGATGTTCAACATATTGTGCTATTACGCTGATGGATCTGAAGTGTACTGGCTGAATCATGGGAGAAAGGCAATCCTTTAGGAAGAATCAGCAGTAGTTCAGTACCATGCAGACCCTGACATCCCCCACCCTTTCATCAATTACCAATCAGATGGATTTCTAAAGCTCTTCTCTTTTTTACATCAACAGTTGTTACAGAGTGCTTTTCAGAAGCACAAGCAGAAGCACAGCCCTCAGCCTCAGACAGTGGTGATGGTGACTGGCAGAGCAGAGGAACAGATCCTAGATTACATCTGCAGGTAGAGCTCTGGCAGTTTGCCTGTCCCGTCCCCTGACTGTCCTCTCGTTTACCTTTGGAATTCCATGtgctccctccgtctctcctcctcttctcctgcgtTCTTCCTTCTTTTTCCCAGGAGCGCTACTGACTCACAGGCTCTGTTGTGATGGCTTTACAATGTGTGCAGGGTTCACTCAGATTGTCCTCTGTCCTGCATCTTTGCTGCTTCCTTTTCTGTCCGCCATCCGTGACCCCTgtttgaagaagaagaagaggtccACTTCAATGTGCTATATCCATGGATGTCCAACTGCTCCTTGTCTTGTGCTTTTTGTCCGACCCCTCCAAAgacttacacacacatacagtggttTGAGAGCTCTGACAGATTTCGGTCCACCTCCTGAAAAATCATCAAGATCTTTTCATAAATAGTTGAACATTTGGAAATCTGGGCCAATGTTGTGTATTGTTtatgtgtttttgtattgtttatgtaTTGTTTGATAAAAATACGTTTTATGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127528 lncRNA downstream 20079 9372635 ~ 9372867 (-) True G111758
TU127463 lncRNA downstream 62820 9329123 ~ 9330126 (-) True G111706
TU127458 lncRNA downstream 88145 9283895 ~ 9304801 (-) True G111703
TU127496 lncRNA downstream 116315 9274220 ~ 9276631 (-) False G111734
TU127497 lncRNA downstream 116315 9275051 ~ 9276631 (-) True G111734
TU127550 lncRNA upstream 21740 9425233 ~ 9425519 (-) True G111777
TU127557 lncRNA upstream 24948 9428441 ~ 9428663 (-) True G111780
TU127558 lncRNA upstream 25649 9429142 ~ 9429354 (-) True G111781
TU127559 lncRNA upstream 25893 9429386 ~ 9429682 (-) True G111782
TU127561 lncRNA upstream 26839 9430332 ~ 9430542 (-) True G111784
XM_036937351.1 mRNA downstream 43641 9330271 ~ 9349305 (-) True LOC110520732
XM_036937356.1 mRNA downstream 64184 9322760 ~ 9328762 (-) True LOC118937655
XM_036937349.1 mRNA downstream 71292 9315853 ~ 9321654 (-) True LOC110506813
XM_036961584.1 mRNA downstream 90531 9284288 ~ 9302415 (-) True LOC118944050
XM_036937341.1 mRNA downstream 108201 9245445 ~ 9284745 (-) False LOC110510828
XR_005034948.1 mRNA upstream 443037 9846530 ~ 9846857 (-) False LOC118937662
XM_036937466.1 mRNA upstream 506977 9910470 ~ 9913331 (-) False LOC110507310
XM_036937467.1 mRNA upstream 506977 9910470 ~ 9913331 (-) True LOC110507310
XM_021568587.2 mRNA upstream 597243 10000736 ~ 10006810 (-) False LOC110493960
XM_021568588.2 mRNA upstream 597243 10000736 ~ 10006810 (-) False LOC110493960
TU127380 other downstream 324884 9067612 ~ 9068062 (-) True G111659
TU127371 other downstream 342148 9050289 ~ 9050798 (-) True G111650
TU127230 other downstream 620126 8771536 ~ 8772820 (-) True LOC110519098
TU127197 other downstream 656548 8705304 ~ 8736398 (-) True LOC110535184
TU126626 other downstream 870185 8522002 ~ 8522761 (-) True G111044
TU127651 other upstream 35869 9439362 ~ 9439938 (-) True G111855
TU127773 other upstream 231044 9634537 ~ 9635130 (-) True G111955
TU127893 other upstream 357807 9761300 ~ 9761665 (-) True G112066
TU127903 other upstream 375518 9779011 ~ 9780455 (-) True G112076
TU128303 other upstream 597237 10000730 ~ 10003643 (-) False LOC110493960

Expression Profile