RNA id: XM_036937374.1


Basic Information

Item Value
RNA id XM_036937374.1
length 8071
RNA type mRNA
GC content 0.49
exon number 43
gene id LOC110519250
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9445190 ~ 9482500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAAGTCACGCCCACACTGACTCGACGCACATGATTAGGGGTGTTAACCTGCAGTGGCGTAGTGCTAATCTAGCTACTGGATGCTAACAAGTCTCTCTCTTTATATTGAGGAAAAATACGATATCACAGTGGAAGACAGTTAGTCAGCCAAGTATCGGACAATATACATCGCATCTTCACTGGATTACTGCGCGTGAGGAGATTCATCCTTGCAATTgtgtgtaacgttagctagcctgcTTGCTAGTTAGTTAACATCCAGCTAGCCTGTCAGACGGGCTGTTTGAAAGTGTGGTGAAACCAGATGAACAAGTTTGAACCCTTTCTGACCACCAAATGAAATCCTAAATAtctccagtcccagccttcagacAGGCACAATGGAGGAGTCAGATGTGGAGCAGGTGACCCTGGCCCTGCTGGATTCAGCCAATGACAAGGACCCAGTGGTCAGAGAGCAGGTCAGGAAGTCCATACTGACCCTGGGGAAGCAGCAGCCTAACAAGGTCCTGTCCATGTGCCAGGACTACCTGGTTAAGCACCCCAagCTTATCGTTGGACACAGAGTTGTCATACTGCAGACGATTGAGCTGATTGTGAAGACCAAGATAGACGATATCAGTTACCTGAAAATCAAAAGCATCATTTCTTTGGCCTCCGATGAAATGACCCGATCAAAGGATGTTGTACCTGATTGGCAACAGGCAGCCAGCAATATTCTGGTTGCTGTGGGAAACAAGTACATCAATGACATCATGGAGGAAATCCTCAGCAAGTTCCAGCCAGGGATCCTGCCTCATTTTTTTGTGGTCCAAACATTAGCAAGCCTCTCTGAATCCAACGTTTATGGTATGGTGCCGTTTCTCAATGCCATCTTGGGCACCATGCTCCCAATGCTGGGCATGGCCAAGCAGGACAACATGAAGTGGGTGTTCTCCTCTGcTCTGTCCCACTTCAGTGAGAGTATCCTGGAGTACCTAGCCAACCTGGACAAAGCTCCCGACCCAACGGTGAGAAAGGACACGTTCTCCAGCGAGATCTACGCAGCCTACGACATCCTCTACTGCAGCTGGCTCCAGAGCAGGGAATCCAAGCTACGACTGACGGTGGCAGAAGCAGTGGGACCCATGAGTCACCTGATGGCCCATGATAAACTGGAGGAGCAGCTTCCTAAACTCATTCCCACAATCCTCTCCCTGTACAAGAAGAACACGGAGCATTACGTCATCAGTAAGAGCCTGTGTCAAGTTCTGGATGCTTCTGTGAACATGGGCAGCAGAGTTCTGGAGACGCAGATCGACAGCCTGCTCACTACTCTAAACCAGCAGGTTTGTGCACCTGTTGACTACAGCAACCCACTGACGGTGAAAAATCACAACGAGGTATTGAGATGCTTCAGCATTCTAGccAACACCTTCCCAGACCGGCTGGTCATGTTTGTGCTTCAGAAACTGGAGAACAGTAATGAGAGAATCCGCATGGGCTCCCTGGCTGTGCTCCGACACCTCATCAACTCCTCCACATCCATTATGGAGTCGAAGAAGCTTCTCATCCTGGCCAGCATCAGACAACCACTGGCTGACCACAGCAATAAGGTGAAGAAGAGGGTTGTCCAGGTGATCAGTGCCATGGCTCACCATGGTTACCTGGAGCTGGAGGGAGGAGATCTGCTGGTCAAGTTTATCATCCAACACTGTGCTCTCCCCGACACCTACTATCGTCCAGGCCAGCGCCCCAGTGACCCAGAGGAAGTAACCAATGAGGCGCTGCGGAGCATGTGTGACAACACACTTCACCTCTTCACTACGACCGTGGGACGCCTGACTGACgtCCTGTGGCCCATGCTGCTGTACTACCTGACCCCAGGTCAGTACTCCAACGCCACCGCACCGCTCTGTAAGAGCCTCACGCTGCTGGGAACCAAGAAGAGAGCCTCCCAGGAGCCCAACTTCAACATCGACTTCAACGAGCATGTTAATCTTCCCTCTCCACATATACTGATGGTGCGGCTCTTGGTGAATGGTTCGTTCCCGTTCCGGAGTCGTGGCCATGGTGCACCGTCTCTGTCTCTACTGAACGTTATAAGTCCTAATATCCACCCCAACGCTGAGACACTCTGGGAGAAGGAGATCCCTGCTCTCCTCAGCTACCTGGAAGAGTCTACCCCAGAAACACTAGACAACAAGAAATGGGAAGAGAGTCTATTACAGTTCCTAGCCAAGTCCCTGGTGGCCATAGCTGATGACAAGTGGAGCTGTCAGCTGGCTATAGAGGCCACACGTTACCTGTCCACCTATAACCAGTCCCTGGAAGAGAAGAGTTTCCTCTACAGGTGCATTGGTGTGACTCTGCAGCAGTGTTCCAATAAGGAAGTGGTCCAGAAGCAGCTACAGGAGATGCTGATCAGTGCACGACACAACGACGCCATCGAGAGAGCGGGTGTCGCCATGGGGATCGGGCTGTGTGCAAGCAGTCATCTCGATGCCACTCTGGCCAAACTGGACGACTTCGGGAAATCTGACGCCTTCAAGAAAGCCTCAGGAATATTCAGCCTGCTCAAAGACAAGAATGACTTGGATGTAGAGAAGATGAAGAGCACGTTGATCCTGTGTTACGGTTACGTAGCGCTCCACGCCCCAGAGGACCAGATCCTGTCCCGCATCGACTCAGACATCCTCCGCAGCATCAGTAAGCACTTCAACACCAAGGTTCTGGGAATTAAAATAGAGACCAAGGACCTGACCATGAAGCTGAGTCTGATTCAGAGTGTGGGCCTCATAGCCAGGGCCATCAGCACCGTCGTACGTAATCAGGGCTACATGTTCGTCCGCAAGCAGGAACTCATGGGAGTCATGATGGATTTTATCAAGGCAGAACCCACGGATGCCATGCGGACTCCGGTTCGCCACCTTGTGATGACCACGTGTGCCAACCTCATTAACCTGGAGCCGGCGCTGACGGAGAATGAGAACTTTGATATGCTGCGGACGTGTCTGAACGGCGTGTACGGCCTTCCCCCGGTGAACACTCCGGACAAGGACAGGGGAAAAGACGAGGAGGTGCTGGAGCCccaacagagagagGAGTTATACAAAGACACCTTCAATGCTCTTCAGGAGTTGTTGAGGAATATTCTTGCAAGAGACCTGAGTCCAGACGGACTCCAGAGTGTATTCAAGCACATTGAGGAGTGGTTGAGTTCTGGTCAGGGTcatgagagggagagggcgatGAACACCACCGCTCACATCCTAGAGTTCTACTTCAACAACCTCCACGTCAAAAACATGGTAACCTTCCACAACCTGGGTTCTCTCCTGGGCCGCCTGGCCCCCCGATGCACCGACCCCAACCCCCTGGTCCGCAGGGCAGCCATCGACTGCATCTATACCCTGCTCTACATCCAGCTACGCTACGAAGGCTTCTCTCTGGACTATAAAGACGACTCTGTGGAGAGACTGATCACACTGAGGGAGAGCATGGACAACCCAGACCACTCTGTCCTCTACAAGACCTGCTCCGAGCTGGCCAAGATCATCAGTAAGCGTCTGCCCCAGCAGCAGCTCAACACTCTGATCTTCATGTTGATTGAGGGGCTGGTGGACTCCCAGTCTAACTGCTCCAGAGCCTCCAGTGTTCTACTCAACACCCTGCTGAAGAACAGAGGAGCTGGACTACAAGACCTGGTATCAGAGATGCTGGAGGTGCTTCACATCCGTCTGCAGATGATCAGTGAGGAGCAGGTGAAGGTGTCTGTGGCCCAGTCCATCCTCATCCTGGCTACACAGCACCTCCAGACTGTCATCAACACACTCATCTCCTACCCCCTGCCCTTCGACAGTTGGAGCTGTGAGATGTGGATTGCCCTGGGGGCAGACAGTAAACTGGCCTCTCAGATCATGGAGATGCTGATGGAGAAGCTCAACATCATGGTGCCCTACGTGGACAAGAAGGAGTCCATGATGAGAGGAGGCCTCACCAAGGTGGCCACCAGTCACCCTCTAGCTATGACCTGTGCCCTGAAGGAGATGATGCTGAATGGGCAGAGCCAGGAGGCGGTGGTGTCCCTGTTCCCCCAGCTCTTCAGCTCCCTGCTGGTCCGCCTGGGCTCCAGCGTGGGGGTCACACTACCCAAAGACATCAACAGCTCCGGAACAAACAGGAAGAGCCCCACCAAACTGTCCGCCGGCTTCGACGTGTGCGGGGTAGCGGTGGAGGCGCTGCGGATCCTCCTGGCCCGGGCCCAGCTGGACCATGTAGTTAAACCCCTGGACCAGGAGGGGGCCTGGGACAAGATGAAGGACCCCCAGCAGCACATCACCGGGGTCACCCTCCTCGCCAGGGCCATGGCCAAACACGCAGGCCCTCGTCTCCCGGCCATAGTGGAGTGTCTGTGCCCCTGTCTCAACAACATCTACGAGTGTCAGAGGGTCACTATCACAGCCTTCTTCTCTGAGTTGCTGAACCACCACGTGGTGACAGAGCTGATGATGATGGATGTCCTGATGAACAACATGATGGAGCGTATCTCTGACCCCAGCTGTACTGTCCGCATGCTGGCCGTCAGGGGGCTGGGGAACATCGCTGTGGGATCACCTGAGAAGGTAAATAAGTATGCCAAGGAGCTGCTGGCTGCTATGAGCTctgggatggaggagaaggacgACCCTGGGAAACGCATCACTCTGGAGGCCATGTCGGGCCTGTCCAAGGTGCTCCTCTACCTGGACAAGAAGAACGTCCAGCTGCTGGTCGTCTACATCTTCATGAAGATTAAACCCTTCCTGGAGAGTGAGAATGATGAGATCCGCTGTGCCTCCATCATGCTCCTGGGGAACCTGTCTAAGTTTGGTTCAGGAGAGCCTGTGTTCAAAGACCAAATCCACAACGTACTGGTCAGCCTGCTGCTGCACCTCAGTGACCCCAACCTGCAGGTGGTCAAGgCGTGTAAGTATGCCATGCGAGTGTGTGCTCCAGTGGTGGGCTCAGAGCTCATCACCACTATGTTCCAGAACCATCTCCACGAGGACAAGAGTCTGCACTACGGAGAGTTCATCAACGACCTCACCAAATATATTATTCAAGACTTCCCTGGCATGCTCAACTTCTACCACATCACTGTCATCCAGTTCTTCAAAAGCAACTGGGCCGAGGTTCGGGCCGGCGCTGCTATGTTTATCGGTTTCCTTCTGGGTAATCTTCCTGAGGAATTATTTTCTCACATCAACATGGGGAGTGTGACCAAAGGTCTGGTCATGCTGCTCCAGGACCCAGACCCAGTGGTGAGAGTCAAGGCAGCTGAAGCTATGGGCCACTTCCATTGAACAGACACACATCCTGCCTGCCAATCATTACTTCATTAGCTGTTTTAGAGTTGTTCATGTTACTGTTTTCTACAAAGATGATCTGGTACTTCACATGTTGACAGTGCAACTTGAATTAGTCCATGAACGTATGTATTAGTGACCAAAGACTGTACCTCCATGTATAGAAAAACATGCATAGCACTTTGGAGCAGTATTATGAAATCTGACACTTTTTGAATTTGTCTTCTAGAATGTTgagtgtgttagggttaggtcaaTTGGCCAATGGGCTTGACCTCCGCTGAGCTTAGTGTTTAGCTGAATTCCAAATGGAGCCCTATCCCCTCTTCCCTAGGCACTCCTGTAGACCTGAAGGGAATAGAACGGAGTAGGCAATATGGTAGTTACTTCCTTGGCCTCCTGATGGGATTTGCCTGCTGGATGGAATCTCCACCATATTGGTTATAGCGGTCTGTCCCTTTCAGGTCAGGAAAAGGGGCTTGTGGGGAGGGGCTAGGGGTTGATCTCCAGCCTCCACTCCATTCACACTAGTGTAGTGGACCAACCCCTGAAACACACGTAGGGCTGGCACTATTACCCTGTAACCcacggttatggatgaagaccgtaAAGAATAACCTCCATTACCGTAAAAAATGAATGTGTGCAGTTAAGTCCCTTTCTTCTGCAACATGGACTCTTAACATGATTTATCTTTGTTGttatgtagaatgttcattcaaatgatgttaactggtgtggctcatgcaatggaatgtacTGCACTTTTTGTAATGTCTATTGAGTTGAATCACCAAATCACAGCACatattttacttcctgctttggtCCTATGGGTAGACTCGCAATGGCTGCTAGTCCACCCATTAAGCCAACGTTGAGTTGAACGGGGACTcccgttctattcattctgtttctatggcagcacatgcagtcaggaaCGGAGGAGAAATGTGCGTCTACATTTATTCATTTGTATTTCCTTTTCTATTTGAACGGTTGTTACGGTGACCGCAGTCATTTGGCTGACCAAATTGCCGTCCTACAAAGCTCCATGACCGTCCACAGCCCTCCACTCAGGGATGAGCAGTTATCATCCACGTCCAAGGAGGCTGTCTGTCAGCGAGGACAGCCCAAAACCATCCCATGTACCTGTTCTTACACTTACTTCTGAGGCAGAAGGGATTTCAGAGGCTCCATTTATTCTCGTGCTAGCATTGTTTAACAACAGAACTGCATCCTGAAACACTATTGTAGCTAGTTCAGAAAAGGTCTTGTAGGAACAGGAGTTTTCTCCTGACCACGAGACCTCACCAGGGGTGAAAACAGGCCCTAGTTATACATTGAGGGCCCAGAGTTTCTACTTGTCAGGTTAGGGAAAACGCCTGGGTCACTTTCATTAGGACCACGCAACGGAAAATGAATATGGGAAGTTAGTCCagatagtccctccctgttttcagtcagttttcttccgtttggtgcctaatgaatgtgaCCCCTAGTCTTTATCTGTTCTTCTTTACCCCAGGTACAACATGTACGCAACCAGGCACTCCCGTGGAGTTGCCACCGTGCCAAATAATCAGACCTGGATTTAAAtactatttgatttatttcaaaaGTAGTGTGGTTTACTTTAACCTGCCAGAGGGGCAGGGTTTGCAGTTTAGCCAGCGCTTTTCTATTGGATCCATTGTGCCAGCAGGCAATCAGAATTAAGAACACCTAATGTacttgaaatgatttcaaatagtatttgaacccatatCTACAAATAATAGTTTTACTGGGTAGCTGCATTAAGATGGACGCAATAACCTTCTCTTTCTTTTCACATCGGTCCTAgtcttcacactctctctcttaaaAGATGCACTTCACTTTTCTTTTCACATCGGTCCTAgtcttctctcactctttctcttaaAAGATGCACTTCACCTTTCTTTTCACATTGGTCCTAGTCTTCTCTCAATCTTTCTCTTAAAAGATGCACTTCACCTTTCTTTTCACATTGGTCCTAgtcttctctcactctttctcttaaAATATGCACTTCACCTTTCTTTTCACATTGGTCCTAGTCTTCTCTCAATCTTTCTCTTAAAAGATGCACTTCACCTTTCTTTTCACATTGGTCCTAGTCTTCTCTCAATCTTTCTCTTAAAAGATGCACTTCACCTTTCTTTTCACATTGCTCCTAGTCTTCTCTCAATCTTTCTCTTAAAAGATGCACTTCACTTTTCCACTCCTGTCCGTTTCATGTGATTAGATTAGGGTACTGATTATAACAGGTTATGAGGTCTTAAGAGATGACATTCCTGTCGAGGTTTTACGTTGCACTACTTAATCAGTCTGTCATTGTACACAGTGAATGACACATCCACATGTATTTGTTGTGTTACTGATGGATAGAGATGTTTTACTGTGGTAAAGTGCAGTATAGGCACTATTTAATGTATTGCCTACATTGGGTAAAAGTCCTGGTCCTAAAGTACAGCTGGATTGGACCTGTGTGTCTGTCGGTGTCTGGGGTGTTGAAGGGTTACTGGGGATGATGGCTGTTCTCTTGGACCATTCTTTGTTAATGTAATATTTTAATGTGACATCTTTCAATAATGGACATGGGAAAAGTATCATGTATGCACACTGTGTCCATTTGAAACGGAAACAGGCCTATGACGTTGAAGgaaatcatattttatttacaaaataaaGTGACGATCCCTATAAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127563 lncRNA upstream 5747 9438637 ~ 9439444 (+) True G111786
TU127562 lncRNA upstream 8362 9436600 ~ 9436829 (+) True G111785
TU127553 lncRNA upstream 17226 9427243 ~ 9427965 (+) True G111778
TU127183 lncRNA upstream 53022 9391764 ~ 9392169 (+) True G111477
TU127163 lncRNA upstream 95159 9349779 ~ 9350032 (+) True G111460
TU127636 lncRNA downstream 119259 9601759 ~ 9602403 (+) True G111840
TU127755 lncRNA downstream 137612 9620112 ~ 9620393 (+) True G111937
TU127772 lncRNA downstream 152043 9634543 ~ 9634819 (+) True G111954
TU127774 lncRNA downstream 153625 9636125 ~ 9637610 (+) True G111956
TU127786 lncRNA downstream 171552 9654052 ~ 9654356 (+) True G111968
XM_036961592.1 mRNA upstream 86769 9355022 ~ 9358422 (+) True LOC118944051
XM_021598151.2 mRNA upstream 129500 9309984 ~ 9315691 (+) True LOC110520731
XM_036937288.1 mRNA upstream 201579 9239896 ~ 9243612 (+) False LOC110535231
XM_036937290.1 mRNA upstream 201579 9239950 ~ 9243612 (+) True LOC110535231
XM_021620097.2 mRNA upstream 216891 9221418 ~ 9228300 (+) False LOC110535224
XM_021586764.2 mRNA downstream 66202 9548702 ~ 9551644 (+) True LOC110506885
XM_036937386.1 mRNA downstream 219490 9701990 ~ 9742723 (+) False LOC110506952
XM_036937390.1 mRNA downstream 262366 9744866 ~ 9757901 (+) False LOC110520736
XM_036937388.1 mRNA downstream 275828 9758328 ~ 9785173 (+) False LOC110520735
XM_036937389.1 mRNA downstream 282270 9764770 ~ 9785173 (+) False LOC110520735
TU127567 other upstream 1150 9440309 ~ 9444041 (+) False G111788
TU127568 other upstream 1150 9440309 ~ 9444041 (+) False G111788
TU127569 other upstream 3425 9440309 ~ 9441766 (+) True G111788
TU127150 other upstream 113575 9330269 ~ 9331616 (+) False G111453
TU127811 other downstream 219540 9702040 ~ 9723871 (+) False LOC110506952
TU127846 other downstream 291703 9774203 ~ 9776451 (+) True LOC118937659
TU128663 other downstream 1329018 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1758232 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1779054 11261554 ~ 11273000 (+) False elovl4a

Expression Profile