RNA id: XM_036937386.1


Basic Information

Item Value
RNA id XM_036937386.1
length 2556
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110506952
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9701990 ~ 9742723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGGTTCTGTTCCACCACGCCACATTCTTACGCATACAGTCAATACGGAACTGTTGTCTGCTGTCCACTACAACTACAGTATTCATACAGTTATTGACATATCGCGTTTTGCAATCCCAACTTCCTCTTGCTCTCTATGACAGTGTGATGTTTGGCAATAGTGGGCATGTGTTATAGCTGCCTGCAAAGTAGGCTAGACGTCAAATGAATCTAGAGCTCTGAAGATCGGCGATATCATGGAAGAAACAGGGGCCCTTATCCGCAAAAGAAGAGCCACTATATCCACTGGAAAATGTGTTCCTTTGAAACAAGTGAATGGGCGGTCAGAAGTTGATGAAAGTGTTAACGGCCGCAGTGACAGCGGCAACATTGTAACTAAGCGAAACGTGTCCGATTTGCCTTCTACCACGTCAAAAGAAAGGAAGAAACGAATAAATGTTCCTAGTGATAGACAGAGTTGCCACAGGTTGCAGGAGTCCCTGTTGAGCTCTGCCAGTGGTTATAGAAACTACAGAGGAGTCCTCAACTGGTGTGTTGTCATGCTGGTCTTAAGCAATGCCCGTCTGTTCTTGGAAAACCTTTTGAAGTATGGAATTCTAGTGGACCCAATACAAGTGGTTTCTCTATTCATAAAGGACCCCTACAACATGCCTGCAGCGTGCCTTGTTATCGtgtCCAACGTGTTTATTGTGGCAGCTTTGTACACAGAACGAAGGCTCTCAGTGGGCTGCATCAGTGAACGTGTTGGGCTGCTGGTTCATTCCATTAACCTGTCAGTCACACTGTGCTTCCCGGTGACTATCGTACTAATGGTGAAGTCCATTACTCCAGTGGGTGGAGCGTCTGCTCTGGGAGTGTACACCGTCCTCTTCCTGAAGCTCTACTCCTACAAAGATGTGAACAAGTGGTGTAGAGAGATGAGCCATGCTAAAGCCCGTAGCCTGGCCCGCTCCCTCTCATGTTCCTCTATACCACGGTCTAGGGAAAGTGGACAGGATTATCAGGTCTCCTATCCTGGAAATGTCACCCTCAGAGATTTGTATTATTTTGTTTTTGCACCAACCCTCTGCTATGAATTAAACTTCCCCCGGTCTCCACGGATTCGAATGAGCTTCCTGCTAAGGAGGCTTTTTGAGATGCTGTTCTTCACCCAgttattggtgggattaacacaGCAGTGGATGATACCCATTATTCAGAGTTCTATGAAGCCATTGGAGGATATGGACCTGCCTATGATGATGGAGCGTCTACTCAGACTAGCCGTGCCCAATCATCTTCTATGGTTGATATTCTTCTACTGGTTCTTCCACTCGTCCTTGAACTTTATTGCTGAGCTCCTGCAATTTGGAGACCGAGAGTTTTACAGAGACTGGTGGAACTCTGAGACCATCACATACTTTTGGCAAAACTGGAATATTCCAGTACACAAATGGTGCCTTCGcCACTTCTACAAGCCCCTGCTGAAGAGTGGAGTCAGTAAGTGGCTTGGCCAATCAGCAGTGTTCCTGGCTTCAGCCTTCTTTCATGAGTACCTGGTCAGTGTTCCACTGAAGATGTTGAGGCCATGGGCTTTTATGGGCATGATGGCTCAGCTTCCGCTGGCCTGGTTCGTGGCGCGTTTTCTCCGAGGTAACTATGGCAACGCAGCCGTATGGCTCTCTCTCATCATTGGCCAGCCAATCGCCGTGCTCATGTACGTCCACGACTACTATGTACTTCACTACAGAGAGGGGTCAGCGGGAGGTGGACCTGAATGACCTCCTCAGGGGAATATATACCAGACCAGCCTTTTATAGGAAAGACAAATAGAGCTAGAAATGTACTGTACGCTACTTTATGGAAGCACCTTAAAGGGGCCATCAGcatttgctacatccatttttggactcatacattaatgatatgtacccatcgATTCTTGAGGaacataacttataaatgcctcaccAGCTTAGTTCGACTGTCGTTCCCCATCACAAACCAAAATATAGGAttgttttactccaatatttgtaaacaaatcaaatgtaaacagacactatatagcctcaaaacatggttaaaactatacttGTTTTTAATCATGGATGGTCAATCGTTGCATCCATATCTCTGTCCACGAATTTGAAAGTGATTccatttctccagtcccatccctcagctttttactgaacCAGGGGTGGGGAGgcagctttgttattgtttcaactgctgattgccactttaaaGATAACACACTTGTTATAGAAACAATCAATTTAGTTAGTGAATATTAGAATATGCCTTATTGAAACATGTCTGACAAGTGCAATTTTCAAAAAGTGCCAGTTTCTCAGAAAATGTACACAACCAGTACATTTGTGTTTGTaagatttgtgtgtatttatgcCACTCAAGCCTCAATATTTTGTCATCTTGTTTTACTTGGGTACGTATAGAGGGATATGTATAGATACGAAAATGGCAGCTGTTGATTCTTGACTTTATTCCATTAATTGGGTCATTATTATGTTGCCGACAGAACTACATGGACAAGTAAATATATTTCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127823 lncRNA upstream 7313 9694367 ~ 9694677 (+) True G111998
TU127808 lncRNA upstream 16712 9684809 ~ 9685278 (+) True G111990
TU127796 lncRNA upstream 24613 9677177 ~ 9677377 (+) True G111978
TU127786 lncRNA upstream 47634 9654052 ~ 9654356 (+) True G111968
TU127774 lncRNA upstream 64380 9636125 ~ 9637610 (+) True G111956
TU127836 lncRNA downstream 4636 9747359 ~ 9747559 (+) True LOC110520736
TU127838 lncRNA downstream 9381 9752104 ~ 9752340 (+) True G112013
TU127820 lncRNA downstream 40833 9783556 ~ 9784652 (+) True LOC110520735
TU127909 lncRNA downstream 47392 9790115 ~ 9790613 (+) True G112081
TU127910 lncRNA downstream 49886 9792609 ~ 9792883 (+) True G112082
XM_021586764.2 mRNA upstream 150346 9548702 ~ 9551644 (+) True LOC110506885
XM_036937367.1 mRNA upstream 219490 9445190 ~ 9482500 (+) False LOC110519250
XM_036937390.1 mRNA downstream 2143 9744866 ~ 9757901 (+) False LOC110520736
XM_036937388.1 mRNA downstream 15605 9758328 ~ 9785173 (+) False LOC110520735
XM_036937389.1 mRNA downstream 22047 9764770 ~ 9785173 (+) False LOC110520735
XM_036937396.1 mRNA downstream 30851 9773574 ~ 9776807 (+) False LOC118937659
XM_036937399.1 mRNA downstream 78407 9821130 ~ 9845619 (+) False LOC110520749
TU127567 other upstream 257949 9440309 ~ 9444041 (+) False G111788
TU127568 other upstream 257949 9440309 ~ 9444041 (+) False G111788
TU127569 other upstream 260224 9440309 ~ 9441766 (+) True G111788
TU127150 other upstream 370374 9330269 ~ 9331616 (+) False G111453
TU127846 other downstream 31480 9774203 ~ 9776451 (+) True LOC118937659
TU128663 other downstream 1068795 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1498009 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1518831 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1518831 11261554 ~ 11272897 (+) True elovl4a

Expression Profile