RNA id: TU127811



Basic Information


Item Value
RNA id TU127811
length 904
RNA type TUCP
GC content 0.47
exon number 7
gene id LOC110506952
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9701990 ~ 9742723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTGTTGTCTGCTGTCCACTACAACTACAGTATTCATACAGTTATTGACATATCGCGTTTTGCAATCCCAACTTCCTCTTGCTCTCTATGACAGTGTGATGTTTGGCAATAGTGGGCATGTGTTATAGCTGCCTGCAAAGTAGGCTAGACGTCAAATGAATCTAGAGCTCTGAAGATCGGCGATATCATGGAAGAAACAGGGGCCCTTATCCGCAAAAGAAGAGCCACTATATCCACTGGAAAATGTGTTCCTTTGAAACAAGTGAATGGGCGGTCAGAAGTTGATGAAAGTGTTAACGGCCGCAGTGACAGCGGCAACATTGTAACTAAGCGAAACGTGTCCGATTTGCCTTCTACCACGTCAAAAGAAAGGAAGAAACGAATAAATGTTCCTAGTGATAGACAGAGTTGCCACAGGTTGCAGGAGTCCCTGTTGAGCTCTGCCAGTGGTTATAGAAACTACAGAGGAGTCCTCAACTGGTGTGTTGTCATGCTGGTCTTAAGCAATGCCCGTCTGTTCTTGGAAAACCTTTTGAAGTATGGAATTCTAGTGGACCCAATACAAGTGGTTTCTCTATTCATAAAGGACCCCTACAACATGCCTGCAGCGTGCCTTGTTATCGtgtCCAACGTGTTTATTGTGGCAGCTTTGTACACAGAACGAAGGCTCTCAGTGGGCTGCATCAGTGAACGTGTTGGGCTGCTGGTTCATTCCATTAACCTGTCAGTCACACTGTGCTTCCCGGTGACTATCGTACTAATGGTGAAGTCCATTACTCCAGTGGGTGGAGCGTCTGCTCTGGGAGTGTACACCGTCCTCTTCCTGAAGCTCTACTCCTACAAAGATGTGAACAAGTGGTGTAGAGAGATGAGCCATGCTAAAGCCCGTAGCCTGGCCCGCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU127823 lncRNA upstream 7363 9694367 ~ 9694677 (+) True G111998
TU127808 lncRNA upstream 16762 9684809 ~ 9685278 (+) True G111990
TU127796 lncRNA upstream 24663 9677177 ~ 9677377 (+) True G111978
TU127786 lncRNA upstream 47684 9654052 ~ 9654356 (+) True G111968
TU127774 lncRNA upstream 64430 9636125 ~ 9637610 (+) True G111956
TU127833 lncRNA downstream 1300 9725171 ~ 9725380 (+) True G112008
TU127818 lncRNA downstream 1692 9725563 ~ 9739707 (+) True LOC110506952
TU127836 lncRNA downstream 23488 9747359 ~ 9747559 (+) True LOC110520736
TU127838 lncRNA downstream 28233 9752104 ~ 9752340 (+) True G112013
TU127820 lncRNA downstream 59685 9783556 ~ 9784652 (+) True LOC110520735
XM_021586764.2 mRNA upstream 150396 9548702 ~ 9551644 (+) True LOC110506885
XM_036937367.1 mRNA upstream 219540 9445190 ~ 9482500 (+) False LOC110519250
XM_036937369.1 mRNA upstream 219540 9445190 ~ 9482500 (+) False LOC110519250
XM_036937372.1 mRNA upstream 219540 9445190 ~ 9482500 (+) False LOC110519250
XM_036937374.1 mRNA upstream 219540 9445191 ~ 9482500 (+) False LOC110519250
XM_036937390.1 mRNA downstream 20995 9744866 ~ 9757901 (+) False LOC110520736
XM_036937388.1 mRNA downstream 34457 9758328 ~ 9785173 (+) False LOC110520735
XM_036937389.1 mRNA downstream 40899 9764770 ~ 9785173 (+) False LOC110520735
XM_036937396.1 mRNA downstream 49703 9773574 ~ 9776807 (+) False LOC118937659
XM_036937399.1 mRNA downstream 97259 9821130 ~ 9845619 (+) False LOC110520749
TU127567 other upstream 257999 9440309 ~ 9444041 (+) False G111788
TU127568 other upstream 257999 9440309 ~ 9444041 (+) False G111788
TU127569 other upstream 260274 9440309 ~ 9441766 (+) True G111788
TU127147 other upstream 370424 9330269 ~ 9331616 (+) False G111453
TU127846 other downstream 50332 9774203 ~ 9776451 (+) True LOC118937659
TU128663 other downstream 1087647 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1516861 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1537683 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1537683 11261554 ~ 11272897 (+) True elovl4a

Expression Profile