RNA id: TU127836


Basic Information

Item Value
RNA id TU127836
length 201
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC110520736
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9744866 ~ 9757901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCAGTCCAGTATGTATACCTTAACTCAGGTCTGTAGATCCAGTCCAGTATATACACCTTAACTCAGGTCTGTAGATCCAGTCCAGTATGTATACCTTAACTCAGGTCTGTAGATCCAGTCCAGTATATACACCTTAACTCAGGTCTGTAGATCCAGTCCAGTATATACACCTTAACTCAGGTCTGTAGATCCAGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127818 lncRNA upstream 7652 9725563 ~ 9739707 (+) True LOC110506952
TU127833 lncRNA upstream 21979 9725171 ~ 9725380 (+) True G112008
TU127823 lncRNA upstream 52682 9694367 ~ 9694677 (+) True G111998
TU127808 lncRNA upstream 62081 9684809 ~ 9685278 (+) True G111990
TU127796 lncRNA upstream 69982 9677177 ~ 9677377 (+) True G111978
TU127838 lncRNA downstream 4545 9752104 ~ 9752340 (+) True G112013
TU127820 lncRNA downstream 35997 9783556 ~ 9784652 (+) True LOC110520735
TU127909 lncRNA downstream 42556 9790115 ~ 9790613 (+) True G112081
TU127910 lncRNA downstream 45050 9792609 ~ 9792883 (+) True G112082
TU127911 lncRNA downstream 54129 9801688 ~ 9805928 (+) True G112083
XM_036937386.1 mRNA upstream 4636 9701990 ~ 9742723 (+) False LOC110506952
XM_021586764.2 mRNA upstream 195715 9548702 ~ 9551644 (+) True LOC110506885
XM_036937369.1 mRNA upstream 264859 9445190 ~ 9482500 (+) False LOC110519250
XM_036937388.1 mRNA downstream 10769 9758328 ~ 9785173 (+) False LOC110520735
XM_036937389.1 mRNA downstream 17211 9764770 ~ 9785173 (+) False LOC110520735
XM_036937396.1 mRNA downstream 26015 9773574 ~ 9776807 (+) False LOC118937659
XM_036937399.1 mRNA downstream 73571 9821130 ~ 9845619 (+) False LOC110520749
XM_036937401.1 mRNA downstream 73572 9821131 ~ 9845619 (+) True LOC110520749
TU127811 other upstream 23488 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 303318 9440309 ~ 9444041 (+) False G111788
TU127568 other upstream 303318 9440309 ~ 9444041 (+) False G111788
TU127569 other upstream 305593 9440309 ~ 9441766 (+) True G111788
TU127152 other upstream 415743 9330269 ~ 9331616 (+) True G111453
TU127846 other downstream 26644 9774203 ~ 9776451 (+) True LOC118937659
TU128663 other downstream 1063959 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1493173 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1513995 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1513995 11261554 ~ 11272897 (+) True elovl4a

Expression Profile