RNA id: XM_036937399.1


Basic Information

Item Value
RNA id XM_036937399.1
length 4580
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC110520749
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9821130 ~ 9845619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAAGTCGATAGAGAAACCGAACGAGTCTTCTGACATAATTTATTATAGCAGTTTTGTTAAGTAGGCAATGCAGCTTCTTAACTTCTACGACAGCAAATTAGAATGCACGAGGTTTTGAATTCTTTACAAAAGTAGGGGCAACTGCATTTTTCCAGTACGCATGATTTTGTATCCTTTCTGAAAGCAGGAAGCAGCACGCTCTTAATCGCAGTCAGACAGATAACAGCATTTCCTGGGAAGGTCAAATCAACTGCATTGTTTACAAAGGTGTTTTGAATGTGTCTTTCGGTGGCTACAAATTCATTCAAACGAATGTCAGTGACTTTGGCCCGTGATCTTGGATTACCGATGGACCAACAGAACAAATCCCATGCTTGGATGTGATTCCACCATTGTGAGCCTGATGTACAGAGGAGGAAGGACCGGTTCTGATGGCAGACCATCTTCCCTCAGGGCTACTGGAAGCGTGTGTTGTTGTCGGAGCCTCTGGGGATAAACTCAAGGATGTCTATCAGTCTCTACAGCAGGGCAACAGCACAACAGACCTCCTTATTTTAGACCCAGAGGTCTTGCAAGTCCACGTGCCTCCGTTTGTGACCAAAGAGAATGCAGATGAGTCTGGTGTCCCCAGAACCTTCAGTCGAGTCCAGTGCAGACGGTCCTTCATCAAGAAGAAGGAGAGGCTAGTGGTGGCTCCTAGTGGCCCTGGAGGGGCCGGGAGCAGTGAGGGGGCCACTGTCACGGAGGATGTCAGCGTCCCCAAGGACATCGACCTCATGGCCCTGCCCCAACTCTGCTTTCCAGGGGGGCTTCAAGTAACAAATGAACCAAAAGAAGAGCGTTTTCACTTTCTAGTCTTCACGGATGTGTTCGGTAACCAAACCCATGGAGTGGTTGTTCAGTGTTGTAGACCATTTCAGGAAGGGTCAGTGTTCTATCAGAATGGACACTGGTCGTCCACCAGGACCACTAAGCTCTACACTGCTTTTGCCATCTGTGTCATATCCAAGCATCCTTATTACAATGCTCTGAAGGACTGTCTGTCTTGTTTGCTGGCGCAGCTTAGAGCATGCAGGTTGTCTGAAGAGAGGGTGAAGGAATTTGCAGCCAAACTGTCTCTAGTGCCCATTCCACCCCCTGGACAACTACATGTGGTGTTCAACCTGAGACCCCTGATGATCGTACTGCCTTCCAGAGAGGATAAGGAACACCCCGCTGTAGACCTGGACCTCCATTTGCCCTTCCTGTGCTTTAGATCCAAACAGATTTTACAGATCATCACTGGTATTCTGATGGAGCAGAGGTTAGTGTTCTTCTCAGCTGACTGGGCCCGCCTCACCCTGGTGGCAGAGTGTTTCATGTTCTACATCCACCCCCTCCACTGGCAGCACCCCTACGTGCCCATCCTCTCAGCCCAGATGCTGGACTTCGTCATGGCCCCCACCGCCTTCCTCATGGGCTGCCACCTCAACCACTTTGAGGAGGTCGCTGCGGAAACAGACGACCTGATCTTGATTAATATTGATGATGGAACAGTGTCTTCTTCCTGCTCAGAGACTGTCGACCTACCAGACGTCCCCTTCGTTTCGGCAGAGTGTTTTACCAAGCgGAGGAAGGGCCTCCAGCTACAACATGATCTAGAGGTGTGTCACCAAGGGGCCGGCACAGACGTTAATGAGATGCGCATGCTGAGGAGACAATGGCAGCAGAACCTGAACTGGGAAATACAGAAGGTTACCTTGGAGCTCATTGTCAACATGTTTAGGGATGTCAGTGGTCACCTGAACTATGAACACCGAGTGTTTAACAGTGAAGAGTTCCTGAAGACCAGAGAGCTAGCTGACCTTCCCTTTTACAGAAAGGTCTTGGAGACACACATCTTTCATTCATTCCTGAAGGACCGCCTCAATAGGAAGATGGATGCTTTCACACGCATGGAAGTCAACACTCGCTCAGAGACACAGAAAATGAAGGCGATGACAGACAACCCCAGGAGGCCCACCATGCAGGAAATGGCCAGGAAGTATAGCAGCGACCCAGAGATCCGTCTGAACAAGAGGCTGGGGATGAGCCTCCCCAACCTGGGAGAGGAGCGCCATCTCAACCTCGTCAGACAAACCTCCCTCAAGAAGACCATTATCCCTGAAAGTGCCTTCAAGATCCCGCCCAAGCCTGTGAAGATCTTCAAGCTGCCAGAATTTCCTCCTCCCATGGTGCACCACCATGTCCAGAACTACTATGGAGAGTTGATCATACTACTGGGGAAGGCCATCTCCTGTGTTCCTCCTGAGAACTCCACCCTCCTGGCCAGGTACTTCTACCTGCGCGGCTTCATGAACACGCTGTGTTCCAAGCGTCTTGACGCCCTCAGTGACTTCCAGAACCTCTACAAGACGGACATCGAGATCTTCCCCACCGACCTGGTAAAGGCGCTAGTGGACTCGCTGCAGAAGGACGAGTTCTCCCAGGTGGACCGGCGGCCAGAGCTCAAGCGGCTCATCTTCAAGGTGAAGACAGACAACGAGAGGGTGCTGGTCCAAGATGACGACCACGTGAAGAAGTTCCAGCTCCCTAAGACCCACATGCTGCAGGAGGACTTTGTGAAGCGCATCCAGGAGTCTGGGATTGTGAAAGACGTCGCCACCATCCATAGACTGTTTGAGGCCCTCACTGTGGGGCAACAGAAGCAGATTGACCCAGAGGTGTTCCGTGTGTTCTACACCTTCTGGAAGGAGACGGAGGTGGAGGCCCAGGATGTTCACCTACCAGCTGAGGTCATGGAGCACCTGGACAACAACGAGTGTGTCTACAAGCTGTCCTGCTCCGTCAAAACCAACCAGGGAGTGGGTAAGATCGCCATGACACAGAAGAGGCTGTTCCTGCTCACTGACGGGAGGCCTGGGTTTATCGAGATCACCAAGTTCAGAGACATAAAGGAGGTGAACATCTCCTTTGCTCCTTTCCTGCTGCTGAGGATCCCGTCTCTGAAGATCAAGTGCAGTCTGAGGAAGGAGGTGTTTGAGGCCAACCTGAAGTCTGCGTGTGACCTGTGGAATCTCATGGTCAGAGAGATGTGGGCTGGGAGGACGATGGCAGACGACCACAAGGATCCTCAGTACATGCAGCAGGCTTTGACTAACGTCTTGCTCATGGATGCTGTGGTTGGCTGCCTTCAGACCCAGAAGGCCATATTTGCCGCCTCCAAACTGGCATACTTTGACAGAGTGAAACATGAAGTTCCTGTGATGGTTCCAAAGACAACATTGGAGACGTTGAAACACAAGATCAATCCATCACTAGACCTCCCAGCCCCACAGACTGTACATGTCTTACTCTACACAccaggtgaggggaaacagacggCTGACTTTCTGTTACTCTACACAccagGCCAGTTGAGTTACTCGGAGGCAGACGGAGATGGGAACCCCAAGCTGTGGTGTGCCCTCAGTGGTGGGAGGGTGGTTGTGTTTGATGCAGCCAGCTGGTCCATGCAGCAGAACTGTGTTCAAGTGGGATCCTCCCAACTGAACTGCATGCTGGGATTGGACCAGGATCAAGTATGGATTGGCTCCCAGGATTCCATCATTTACATAATTGACAGTCGCAGCATGTCCTGCAATAAGCAGCTGACAGAGCACAGGCATGAGGTTATGGACTTTGCCCTGGAGGAGAGTGACAAGATGAGacAGACATACTCCTGTAGTGCCGATGGAACAGTCATTCTGTGGGACCTCTCAACGCTAAAAGTGAAAAagcagtttcaactgacctgtgATAGGCTTATGTCCATTCAGCTCTTCAATGGAACACTGTGGTGCTGTGCCAGAGACGGCATCGTTGAACTGAGGAAGAACGGAACCCCACATCGTAAGATGACACTTCCTGAGGATCTACGGAGCATTCCCACTGAGTTCAGCAGCCTCATCCTCTTCTTAGAGAGGGGCCAGTTGTGGACGAGCTGTTCTGATTCTGACGAGCTCTGTCTCTGGCACTGTAAAGACCTGACCAAGCCTTTCCTGAGGGTGCGGCTACAGAACTGTACAGGGGTCAACTGTATGATCAAGGTTAAGAATCAGATCTGGGTTGGCTGCAGCGGGCCGAGCCCTGACCAGTGCAGGATGAGTGGGAAGATCTACATAGTGGACACAGAGAGCCACAGTGTAGAGAAGGAGCTGATggcccacacagacagtgtccaGGCACTGTGCTCTGCAGAGGGCCGCTATGTACTCAGTGGCTCCGCCTGCCAGGATGGCAAAATCGCCATTTGGAAGGTTGAGTAGAGGACGAGTAGCCTGGTCCAGTATCTGTTTGTGTGGTTTTGCCAACTCTTTTAAGTGAATGAAATGTTTGGCACAACAATGACAGGAGTTTCTTAAACAGCAGAAATAGATGTGGGACCAGGTTAGAGGAAGAGCCCTGCAGACCCCGAGGAGTCCTACAGGTCTGAAGAGGCTatagccctcaaactcaactctggacctggaagccagttccactgctttgtttcattgttcccctctaatcagggactgatttagacctgggactccaggtgggtgattcccctctaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127913 lncRNA upstream 6785 9814076 ~ 9814345 (+) True G112085
TU127912 lncRNA upstream 9186 9811585 ~ 9811944 (+) True G112084
TU127911 lncRNA upstream 15202 9801688 ~ 9805928 (+) True G112083
TU127910 lncRNA upstream 28247 9792609 ~ 9792883 (+) True G112082
TU127909 lncRNA upstream 30517 9790115 ~ 9790613 (+) True G112081
TU127908 lncRNA downstream 452 9846071 ~ 9847210 (+) True G112080
TU127933 lncRNA downstream 2332 9847951 ~ 9885261 (+) True LOC110507293
TU127966 lncRNA downstream 49278 9894897 ~ 9895609 (+) True G112119
TU128016 lncRNA downstream 138824 9984443 ~ 9984658 (+) True G112162
TU128017 lncRNA downstream 139279 9984898 ~ 9985473 (+) True G112163
XM_036937388.1 mRNA upstream 35957 9758328 ~ 9785173 (+) False LOC110520735
XM_036937389.1 mRNA upstream 35957 9764770 ~ 9785173 (+) False LOC110520735
XM_036937396.1 mRNA upstream 44323 9773574 ~ 9776807 (+) False LOC118937659
XM_036937390.1 mRNA upstream 63229 9744866 ~ 9757901 (+) False LOC110520736
XM_036937386.1 mRNA upstream 78407 9701990 ~ 9742723 (+) False LOC110506952
XM_036937413.1 mRNA downstream 3515 9849134 ~ 9983302 (+) False LOC110507293
XM_036937415.1 mRNA downstream 24363 9869982 ~ 9983302 (+) False LOC110507293
XM_036937418.1 mRNA downstream 24364 9869983 ~ 9983302 (+) False LOC110507293
XM_036937420.1 mRNA downstream 24365 9869984 ~ 9983302 (+) False LOC110507293
XM_036937428.1 mRNA downstream 24365 9869984 ~ 9983302 (+) False LOC110507293
TU127846 other upstream 44679 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 97259 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 377089 9440309 ~ 9444041 (+) False G111788
TU127568 other upstream 377089 9440309 ~ 9444041 (+) False G111788
TU127569 other upstream 379364 9440309 ~ 9441766 (+) True G111788
TU128663 other downstream 965899 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1395113 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1415935 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1415935 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1569312 11414931 ~ 11415178 (+) True G113285

Expression Profile