RNA id: XM_036937415.1


Basic Information

Item Value
RNA id XM_036937415.1
length 4772
RNA type mRNA
GC content 0.53
exon number 34
gene id LOC110507293
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9847951 ~ 9983302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAGGgtttaacagcagcagcagcagcagcagcttgtCCTGGATTACAAGGCTGTCACATTGGAGTAGACAGGCGGTTGTAGTGCTGAACTAACTGAAGGATTGTTTTGGTTTTTTGCCTCCTCTGTGTCTTCTACTACACTGTTTTCCAAGTCAGCTGCCTCCCGGGCTTGATTAATTTACAAGGCTGTGCAGAGGCACGCAGAGGGATTTATTTAGAGGCTGGAAGCCAACGCTGAGGGGATCTGAAGAGGAATCGGAAGATAAGGAGCTGACAACACAGACCTGTCCCATATTgatcttctgtctctctgtctctgtctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctatctctgtctctgtctctctcactccctcttggAGTGACACCAAACACCTCTGACCCGGAAACAGCCTGTCTGTCAGGCAAGGTGGATGTTAGGATTAAAACCTCTTGAGGATTTCACTGAGTTGCTCCCTTGACGtcttctcctcctcaccccaCAGTTTTCTCCCCTGAGGCAGGGCTGTGTGATCGGGTCCGAGGGGGGCAGCGGTAGGGGCTGTGAGGAGCGGAGAGGGGCTGTGCCGGGGTCCTCAGGGGCAGAGGAAGAAGCAGCAGCCTGGCCTGGCCTCTATGCGGTTGTGGAAGGGGACAGGGTCAGGGAGCCTGGGGCTGGTTCAGGCTGCAGGGTCTGGTGGTGGGATAGAAAGACAGGCGCTGCTGCGGCCATCATGGAGAGGAGTGGCTGCATCCCCCTATGCTGGGCCCGGGGCGCCTGTGTTTATGCTCAACACCCTCCACTCCCAAAATATGACAGACAGCTAGCCCCCACCAAAGGAAGCATGGCGTCAGCGTGCCTGGACCCCAACCTGAACCACCATGCTGGGTTGGGCGGTGGGGTGTCAAAGCCGGGGACCATGGACCGCGTGCTCAAGATCCACCACTACTTGGAGAGCAACAGTGAACCATCCACCTGGGCCAGCCACATCCGCCACGGAGACGCCACTGACATCAGGGGTATCATCCAGAAGATAGCAGACATCCACAAGGTGAAGTGTGTTTCCTGTCTGGGCCTGCGTCTCAGCCACCTGCGCTCAGGGAACATCCACTGGCTGCACCCCGACATGGGGGTGTCCCGCGTCAGGGAGAGGTACGAGCTGCTCCACCCTCAGGACGAGTGGAGGTATGAGCTACGGATACGCTACTTGCCAAAAGGATTCTTGAACCATTTTTCAGAAGATAAACCTACACTGAACTACTTCTACCATCAGGTCAAGAGTGACTACATGTTGGAGGTAGCTGATCGAGTCGACCAAGACATTGCACTTAAATTGGGCTGCCTTGAAATCAGGAGATTTTTTAGGGAAATGCGAGGAAATGCCCTGGATAAGAAATCAAATTATGAATTATTAGAAAAAGATGTGGGTTTACGAAGATTCTTCCCCAAGAGTTTGCTGGACTCTGTGAAGGCTAAACCACTAAGGAAACTCATCCAGCAGACCTTCAAACAATTTGCCAACCTAAACGATGAACAGAGCATTCACAAGTTCTTTGAGATCCTGTCCCCCATTTACAGATTCGACAAGGAATGTTTTAAATGTGCCCTTGGGtccagTTGGATTATCTCTGTGGAGCTTGCCATTGGACCTGAGGAGGGCATCAGCTACCTGACAGACAAAGGCTCAACTCCGACACATCTGGCCAACTTCACCCAGGTACAGACCATCCAGTACTCCAGCACGGAGGACAAGGTGCGCCAGGGGATGCTGCTGCTCAATGTGGCTGGAGCCCCtgagcctCTGACGGTGACCACAGCGTCTCTGAACACGGCAGAGAACATGGCGGATCTGATAGATGGATACTGTCGCCTGGTCAACGGAGTCTCCCAGTCCTTCATCGTCCGCGTTCAAAAGGagggagagagagcgctacCTTCCATCCCAAAGTCCACCCCGAAAGTCTCCAACCATGAGAAGCGTCTGGATGGGGGGGTCCGGACAAGGGTTGCATGTGTCTCAGAGACAGACGACTATGCGGAGATCATAGATGATGAGGATACCTACACCATGCCCTCCAAATACTATGGACTAGAGGAAGccagggactatgagattcaGAGACAGAGGATTGAGCTGGGTCGCTGTATCGGAGAGGGACAATTCGGGGACGTCCACCAGGGAGTCTACATGAGCCCGGAAAACCCTGCTCTGTCTGTGGCCATCAAGACGTGTAAGAACTGCACCTCTGATAGTGTCAGGGAGAAGTTCTTACAAGAAGCTTTGACCATGCGTCAGTTTGACCACCCCCACATAGTGAAGCTGATTGGAGTGATCACAGAAAACCCCGTGTGGATCATCATGGAGCTGTGTACACTGGGAGagCTACGCTCCTTCCTGCAAGTGAGAAAATACAACCTCGACTTGGCATCACTGATTCTCTATGCTTTCCAGCTAAGCACAGCACTTTCCTACCTGGAGAGCAAGCGGTTTGTACATAGGGATATAGCTGCCAGGAACGTGCTGGTATCCTCAGTGGACTGTGTTAAACTGGGAGACTTTGGCTTGTCTCGATACATGGAGGACAGCTCCTATTACAAAGcctccaAAGGGAAACTGCCTATCAAATGGATGGCACCAGAGTCTATTAACTTCAGACGCTTTACCTCAGCCAGTGACGTGTGGATGTTTGgtgtgtgtatgtgggagaTCCTCATCTACGGAGTCAAACCCTTCCAGGGGGTGAAGAACAACGATGTCATCGGCCGGATAGAGAACGGAGAGCGTCTGGCCATGCCCCACAACTGCCCCCCTACCCTGTACAGCCTGATGACCAAGTGCTGGGCTTACGACCCTAGCAAGAGACCCTGCTTCACAGAGCTCAAAGCCCAGCTCAGtcAGATATTGGAGGAGGAGAAGCTCCAGCAGAAGGAGAGGACACGTATGGAGATGAGACGTCAGGTCTCCGTGTCCTGGGACTCAGGGGGGTCCGACGAGGCGCCGCCTAAAGTTTGGCCTCGAGAAGCTTACTGTGAAAAGGTCTGTAAGcccagcAGACCAGGGTACCCCAGCCCACGCTCCAGTGAGGGGTTCTACCCCAGCCCACAGCACCTGGGGCAGCCCACCCACTACCAGATGGCAGGATACCCAGGCCCCAGTGGGATGTACCCTCCCCAGGCATCCCACGATCCCCATGACACCTGGAACCACCACCGGCAGCAGGACCTCCCCATGTGGTCTCCCAACATGGAGgacAGGGGGTCTCTGGACATGCAGGTGATGGGTCAGGTTCTGCCCCCCCTCCTGATGGAGGAACAGCTGATGATGCAACAGCAGCAGATGGAGGAGGACCAGCGGTGGCTGGAGCATGAGGAACGCTTCCTGAAGCCGGATTCAAGGAATTCCAGAGGCAGCATTGACCGGGACGACGGCATCCTCCATGGCCCAaCAGGAAACCAGCACATATACCAACCCATAGGCAAACCAGAACATGCATCTCCACCAAAGAAACCCCCCCGTCCTGGAGCCCCCAGTCACCTGGGTAGTCTGGCCAGCCTGAACCCCGTGGACAGCTACAATGAGGGAGTGAAGCCCTGGCGGCTCCAGCCTCAGGAGATCAGCCCACCCCCCACTGCCAACCTGGACCGCTCTAATGACAAGGTCTATGAGAATGTCACAGGACTGGTGAAGGCTGTCATCGAGATGTCCAGTAAAATTCAGCCTGCGCCTCCCGAGGAATACGTGCCAATGGTCAAGGATGTGGGTCTGGCACTGAGAACACTCCTGGCCACAGTGGATGAAACAATCACGTTACTTCCAGCTAGCACACACAGAGAGGTGGAGATGGCCCAGAAGCTGTTGAACTCTGACCTGGCGGAGCTGATCAACAAGATGAAGCTGGCCCAGCAGTACGTCATGACCAGCTTGCAGCAGGACTACAAGAAACAGATGCTGACGGCCGCCCACGCCCTGGCCGTAGACGCCAAGAACCTTCTAGACGTCATCGACCAGAGCCGGCTCAGGATGTTGGGCCAGGCCCGGCCGCCACCTCACTAGCGCTGTGGGAGGAGGGTGTGGAGTGTGGGATGAACTGACTCAACTCAAAGCTTCTGTCTGAATGACTGTCTGGACAGATGGAAGCCATGTGAAGGCAGCCTTGGGTTTGTTCACCTGTTCTGTCATGTCTAATCAGTGATTACTTCAAGGAAGGGAGGAATGAGGAAGATTTCACTGTGAAGGAATTTGAACGGGATACTGCTTCTACAGGACCATCATATGGACTGGACTCCATGTGCATCACCAGGCAGACTAGCGACCACCTCTGACCCTCACTCCCCAACACACCACTCCTTTTTATAGACTTGGAATCTTTGAAGAGTTATTTTATTTTAAGCTGCACCGATTGTGTCGGCTGACTAACTGTGAATTCCTACAGTCCCAGATTTCATCTGAAGAAGAATCAGGAGGAACACTTCAGAAACTGCTCCCCCCAAAGGACATATGGAGGATGATGTGGACAACACAACTGAACTGGAACCTCTCTGCTTTAGTAGACAGAACACTGAGCTCCTCACACTACGTCTAACATGTCTGCTTCATTGTTAACACTTGTCACAAGCTCAATAGTGATTCATGGAGGATTACAAACACTGGGATATATTTTGTCTTGGCTCAGTCGGCCATCTTGTCAAATAGGAGAGAATAAAGGATGAAATAAAATGATGACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127908 lncRNA upstream 22772 9846071 ~ 9847210 (+) True G112080
TU127913 lncRNA upstream 55637 9814076 ~ 9814345 (+) True G112085
TU127912 lncRNA upstream 58038 9811585 ~ 9811944 (+) True G112084
TU127911 lncRNA upstream 64054 9801688 ~ 9805928 (+) True G112083
TU127910 lncRNA upstream 77099 9792609 ~ 9792883 (+) True G112082
TU128016 lncRNA downstream 1141 9984443 ~ 9984658 (+) True G112162
TU128017 lncRNA downstream 1596 9984898 ~ 9985473 (+) True G112163
TU128019 lncRNA downstream 4011 9987313 ~ 9988353 (+) False G112165
TU128021 lncRNA downstream 4011 9987313 ~ 9988353 (+) True G112165
TU128025 lncRNA downstream 8036 9991338 ~ 9991774 (+) True G112168
XM_036937399.1 mRNA upstream 24363 9821130 ~ 9845619 (+) False LOC110520749
XM_036937401.1 mRNA upstream 24363 9821131 ~ 9845619 (+) True LOC110520749
XM_036937388.1 mRNA upstream 84809 9758328 ~ 9785173 (+) False LOC110520735
XR_005034956.1 mRNA downstream 23756 10007058 ~ 10014363 (+) False LOC110493963
XM_036937482.1 mRNA downstream 23761 10007063 ~ 10014363 (+) False LOC110493963
XM_036937498.1 mRNA downstream 37284 10020586 ~ 10035867 (+) False LOC110507380
XM_036937490.1 mRNA downstream 37295 10020597 ~ 10035867 (+) False LOC110507380
XM_036937502.1 mRNA downstream 52962 10036264 ~ 10074921 (+) True LOC110520763
TU127846 other upstream 93531 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 146111 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 425941 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 828216 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1257430 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1278252 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1278252 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1431629 11414931 ~ 11415178 (+) True G113285

Expression Profile