RNA id: XR_005034956.1


Basic Information

Item Value
RNA id XR_005034956.1
length 2154
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110493963
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10007058 ~ 10014363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTGAGCCAGCTGTCCCTGTGTTTAGGAGGAATAACGTATCTTGGATTTAGCAATACCAGATGCAagcctattgttattttactcaCATATGGCACTTTTTTGCGACAGGTTGAGAAGTTCGTTCGGGAAGCACGAGCTAGTCTCCTGCTAGCGGCATAGAAGTTTGTTCGCTAACGTTAGCAGTTAGCTAACTTACTAGCTAGCGCCTTGTTTGCGTGCTAACTAGCTAaataaaggggatacctagttagtTTTACAACTgcatgcattcaactgaaatgtgtcttctgaatttaacccaacccctctgaatcaaagaggggctgccttaatcgacatctacgtcttcggcgcccgggaaacagtgggttaactgccttgctcagggtcagaacgacagctttttgtcagctcggggatttgatccagcattTTACCCGACTTTGGACTGAAACGGTTGTATGATTTTGCAGAACAGTGCTGATAAGTTTACTAGCTACCTAGCCTACGTTAGTGATTCTGTTCCGGATGCAAGTGGAATAACCAGTAATGCAACTGATCAGCTGGCTAGACCAACAAAGTTGCTAAATAACTAAGGACACTTTGCTAAAATGCAGTGGTGCTGAACAAAGCAATGGAAGCTTGTTTCAAGTCGTTCACCATGGGTGGTCTTCGGAGATCTCTGGACATTAAATTCAGGGTCCTCGCCGGCTTTTTGACCTGCAGAACAGTGAGTTGTTCCAGATCACCTATAAAATGCCAACTCTCCAAGCATCAGCCGGTGACGAGGGGGAAAGCAACACTGTTGCGATCATGTCCGTCTGCATATTTCATTCGCCATAGAGGAACTGAGGCATCCCTCTCCAGTGTGGCTCCTGCTTTTGTTATGATGAAATTTGACAAAGATGGAAATGTAACCACATTTGagaagaagaagatggagCTGTATCATGAGCTGAGTCTGCAGGCCAGAGACCTCAGGTTCCAACACCTCACCAGCATCACCGCTAggaacaacaacatcatcattcGCATGGAGGCCTTGAAGGCAGTAGTGACCCCCAATAGCCTGTTGGTGTTGGATTTCCGAGGTCTGGGATTGGAGAGATGGCTGGTCCTGGAGTTGGCTCCACAGTTGAATGGGGATCATGGAGCTCTGGCCACTCATTCACTGCCATTTGAGTTCAGAGCCCTTGAAGCTATTCTGCAGCACAGGGTAAACACCCTTCAGGCTCGACTGAATGAGGTTCACCCTGTCATCCTGGACATTCTAGAGTCACTTGTGGATCCTAAACTACTCTCTGCAGATCGCAGCAAACTGCATATACTTCTTCAGAACAGCAAGAACCTGTCAGAGCTGGAGACAGACATCAAGGTCTTCAAGGACAGTCTGCTGAAGATCCTAGACGAAGAGGAGATGATCGAGGAGCTTTGTGTCACCAAATGGACGGATCCACGTGTGTTTGAGGAGAGCAGTCTGGGCATTGATCATGCTGAGGAGATGGAGCTTCTCCTGGAGAACTACTTCATGCAGGCAGAGGAGCTGGGCAACACGACCAGGGAGCTCAAGGGCCTGATAGACGACTCCGAGAGTGTTATCTTCATCAACCTGGACAGGACCCCAAGGTGTTCTGGCTGGTGACAGGCTTCATGTTCCTGGGTAGTGGACTAATCTGGAGGAGACTGCTCTCGTTCCTGGGTCGACACCTTGAGCCTACCGTCCCCCCACAGATCCCAACAGTTTGGAAGAGAAACCAAATCAACTCAAAAGAAGGAGAGGTGAAGAGTGGACTGAGATGATACTTCCTTGTTGCACCACCTCTCTGCTGAGGAATCTGAACTGTTTGACTGTTTTCATACTACAGGGAGATTTTCCACTCGTTTATTGCAgaggaatgttttttttctcttcataATCTCAATATCAGTTTTTTTTGCAATTGGTTTAAGACTGTTGTAAGCAGTGTTAATGTATTTATTAACATCCTGGATATATTGTTATGATGAAGAACACTGTATACCTCCATCTGTATTCAAGGATACTGCACCAATTCTTACTGTCCAAAAACATGGTCCCACTGTTCACCAAAACCACTGTTCAAATAGTTTTGACTGACTATACAGCTAATAAATAAAGACATTGAGTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128028 lncRNA upstream 10980 9995755 ~ 9996078 (+) True G112171
TU128026 lncRNA upstream 14888 9991850 ~ 9992170 (+) True G112169
TU128025 lncRNA upstream 15284 9991338 ~ 9991774 (+) True G112168
TU128019 lncRNA upstream 18705 9987313 ~ 9988353 (+) False G112165
TU128021 lncRNA upstream 18705 9987313 ~ 9988353 (+) True G112165
TU127981 lncRNA downstream 476 10014839 ~ 10015927 (+) True G112133
TU127987 lncRNA downstream 5842 10020205 ~ 10020603 (+) False LOC110507380
TU128045 lncRNA downstream 7893 10022256 ~ 10022505 (+) True G112179
TU128046 lncRNA downstream 13672 10028035 ~ 10029544 (+) True G112180
TU127975 lncRNA downstream 19784 10034147 ~ 10035858 (+) True LOC110507380
XM_036937413.1 mRNA upstream 23756 9849134 ~ 9983302 (+) False LOC110507293
XM_036937415.1 mRNA upstream 23756 9869982 ~ 9983302 (+) False LOC110507293
XM_036937418.1 mRNA upstream 23756 9869983 ~ 9983302 (+) False LOC110507293
XM_036937420.1 mRNA upstream 23756 9869984 ~ 9983302 (+) False LOC110507293
XM_036937428.1 mRNA upstream 23756 9869984 ~ 9983302 (+) False LOC110507293
XM_036937498.1 mRNA downstream 6223 10020586 ~ 10035867 (+) False LOC110507380
XM_036937490.1 mRNA downstream 6234 10020597 ~ 10035867 (+) False LOC110507380
XM_036937502.1 mRNA downstream 21901 10036264 ~ 10074921 (+) True LOC110520763
XM_036937507.1 mRNA downstream 108082 10122445 ~ 10150796 (+) True LOC110507402
LOC110520765 mRNA downstream 158201 10172564 ~ 10184239 (+) True LOC110520765
TU127846 other upstream 230607 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 283187 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 563017 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 797155 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1226369 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1247191 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1247191 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1400568 11414931 ~ 11415178 (+) True G113285

Expression Profile