RNA id: TU127987


Basic Information

Item Value
RNA id TU127987
length 399
lncRNA type sense_over
GC content 0.39
exon number 1
gene id LOC110507380
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10020205 ~ 10035867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggccctccatggaatgagtttgacacccctgatctaaACATTTGAGTGGCGCCCTCTCATCTCCACTGATGTGAAAACGATAGGTTTAACCAGGGCTCCTTTCCAACcttgttcccggagagctaccctcctgtacgTTTTTATTTCAACCCCAGTTGTGACTAACCTGATTCATTTTACCAACCAGCTCGTTATTAGAATCAGTTgagctagattagggttggagcgaaaacctacaggacgatagctctccaggaacagtgttggagaGTCCTGGTTTAGACCTTTCAATGTATTGTGAGGTGTTATGCTACCCCGGAATCCTGCACTGGTGTCAAAAGTGAGATGGGGCTATCATATCCGGATAGTTCATTACCTGTGTCGGCATACTCTACTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127981 lncRNA upstream 4278 10014839 ~ 10015927 (+) True G112133
TU127979 lncRNA upstream 5914 10012332 ~ 10014291 (+) True LOC110493963
TU128028 lncRNA upstream 24127 9995755 ~ 9996078 (+) True G112171
TU128026 lncRNA upstream 28035 9991850 ~ 9992170 (+) True G112169
TU128025 lncRNA upstream 28431 9991338 ~ 9991774 (+) True G112168
TU128045 lncRNA downstream 1653 10022256 ~ 10022505 (+) True G112179
TU128046 lncRNA downstream 7432 10028035 ~ 10029544 (+) True G112180
TU127975 lncRNA downstream 13544 10034147 ~ 10035858 (+) True LOC110507380
TU128069 lncRNA downstream 65381 10085984 ~ 10090231 (+) True G112200
TU128119 lncRNA downstream 162948 10183551 ~ 10296699 (+) True G112241
XR_005034956.1 mRNA upstream 5842 10007058 ~ 10014363 (+) False LOC110493963
XM_036937482.1 mRNA upstream 5842 10007063 ~ 10014363 (+) False LOC110493963
XM_036937443.1 mRNA upstream 36903 9869985 ~ 9983302 (+) False LOC110507293
XM_036937502.1 mRNA downstream 15661 10036264 ~ 10074921 (+) True LOC110520763
XM_036937507.1 mRNA downstream 101842 10122445 ~ 10150796 (+) True LOC110507402
LOC110520765 mRNA downstream 151961 10172564 ~ 10184239 (+) True LOC110520765
XM_036937532.1 mRNA downstream 165502 10186105 ~ 10189115 (+) True LOC110507434
XM_036937513.1 mRNA downstream 196666 10217269 ~ 10219572 (+) False LOC118937668
TU127846 other upstream 243754 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 296334 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 576164 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 790915 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1220129 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1240951 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1240951 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1394328 11414931 ~ 11415178 (+) True G113285

Expression Profile