RNA id: LOC110520765


Basic Information

Item Value
RNA id LOC110520765
length 864
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110520765
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10172564 ~ 10184239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTGGGAGGGCACTCGCCTGGGCCACAGCGGTGTGGGAGCacctcagtctggaggagttcgtGGAGGAAGTTCGGATGGGCTTTACGGACGCTACCCTGGCTTCCGAGCTGGgtatccccactcagcccctctccattcccatggacgttagaGCAGTAGACGGGTGCTCTATTGGCCGGGTCACCCACAATACCATCAACCTACATGTGTCAGGGAACTACAGAGAGATGACCCAGTTCCTGCTCATTAAGTCTCCTCAGAACTGGTTTGTCTTCATCTATCTCGATGACATCGTCTTCCTCTCCTGCTCCACCCAAGAACACATcagcctccactgtttgtCAGTGTTCTTGGCCAGCTGCTTGGCAATGCCCATGAAAGATCCACACTCGTATTCCTCTGCGGTGGTTCAGGGAGGTGGCACCCCATTTGCTTCCTCCAGTGAGGGACGCACCACAGTGGTCAGTGTGTGGGAGaacatcaactactactactactactactactactactactacaacaccaaCACCTACATCAGCGGGTTCTAGCTGAGATACGGCTACAACTGGTCTCCTGTGATTGGTTGCGAAGTTGGTGAAGAGCAGGAGATGGAGCCATCGTCCAGGTGTCTGGGAAGTACAACCCTCTAAAATACATCTACACCTTGGTGTTCACCACCAACCGGGGGCTCTCTCTGTTGGCCGGCCAGCCCTTCCAAGTCTCCTTCAACTTCTACCCAGCCCACATGGGAAATGAGCTGAGGCTGAAGCGGTCGCTTCAACGGTGCCGGCATCACCTCCATTGGAGCCCACTGGGGATTGGTGTACTTGGAAGAGGCTTGAAACAGCACCTTCTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128069 lncRNA upstream 82333 10085984 ~ 10090231 (+) True G112200
TU127975 lncRNA upstream 136706 10034147 ~ 10035858 (+) True LOC110507380
TU128046 lncRNA upstream 143020 10028035 ~ 10029544 (+) True G112180
TU128045 lncRNA upstream 150059 10022256 ~ 10022505 (+) True G112179
TU127987 lncRNA upstream 151961 10020205 ~ 10020603 (+) False LOC110507380
TU128159 lncRNA downstream 74613 10258852 ~ 10301455 (+) True G112273
TU128509 lncRNA downstream 145311 10329550 ~ 10329961 (+) True G112556
TU128519 lncRNA downstream 162457 10346696 ~ 10346984 (+) True G112566
TU128540 lncRNA downstream 181154 10365393 ~ 10365667 (+) True G112585
TU128544 lncRNA downstream 181862 10366101 ~ 10391656 (+) True LOC110535244
XM_036937507.1 mRNA upstream 21768 10122445 ~ 10150796 (+) True LOC110507402
XM_036937502.1 mRNA upstream 97643 10036264 ~ 10074921 (+) True LOC110520763
XM_036937498.1 mRNA upstream 136697 10020586 ~ 10035867 (+) False LOC110507380
XM_036937490.1 mRNA upstream 136697 10020597 ~ 10035867 (+) False LOC110507380
XR_005034956.1 mRNA upstream 158201 10007058 ~ 10014363 (+) False LOC110493963
XM_036937532.1 mRNA downstream 1866 10186105 ~ 10189115 (+) True LOC110507434
XM_036937513.1 mRNA downstream 33030 10217269 ~ 10219572 (+) False LOC118937668
XM_036937511.1 mRNA downstream 33125 10217364 ~ 10219572 (+) True LOC118937668
XM_036937520.1 mRNA downstream 51501 10235740 ~ 10238379 (+) False LOC110517641
XM_036937526.1 mRNA downstream 51501 10235740 ~ 10238379 (+) True LOC110517641
TU127846 other upstream 396113 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 448693 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 728523 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 627279 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 1056493 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 1077315 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 1077315 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 1230692 11414931 ~ 11415178 (+) True G113285

Expression Profile