RNA id: XM_036937638.1


Basic Information

Item Value
RNA id XM_036937638.1
length 4228
RNA type mRNA
GC content 0.56
exon number 19
gene id LOC110507508
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10626586 ~ 10710360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGGAGAGTGATGTCATCATGTTCGATGCGTTCAAGTGGAATGTGCCACCGGTAGCGATCAGCGTGGATTTTGGACACACTCACACCCGGCTTTCTCTTCAACATTTCCAACTTCATGAAATCTACTTGAATCCGATTCTGTGTTATAGTACtgcacaattattatttttttcgcAATAACTCAGAGGCTTCTCTGAGACAGTGTACGCTAAACGAACCAAGAAAACGACACATAGCATGCTGCGTGCGCTACTTTTCTTTCATCCATAGGCTACATTTGCTTCAGAAGTTTTCTCCCCAAATGTAAGCGACGGCGAAGGTGTTTTTGTACGTTTCTTTGGTTGTTCATGCACTTTTACTTTTTGTACTATTTAGTATTTTTTCTACAAAACAGACCAACAGTTCCATGGACGATATTTGAGAAAAGCGGATGGTCTCCATTACGGAATACAATTGGCAACTGAATGAATTGAGGCCAAACACAGAAAGGAAACAGTTGATTCCGCACTACGAACTGAAATCATTCGGATTCTTTGTCGCTATTCACGTGgTTCCGTCTACAGGAAGTGATCTGGTCTGGTGGTGGTGTCGTCAGGTGGTGGTGTAGTCGGGTGCGGTGTGGTCCAGGGTGTatagctgctgctgcttctctttCTCCGCCTGACGCCCTCTGCCCGCTGCTGGCCCTGCCCATGGCACATACTGCTCTCCTGTGAATCTCATCCAGCAAGCTGGACACCGCAGCTTCGGACCACAACACCTCTGCCTCCACCTCCGCCCCTCCCCACAGGGAACCCTCCAATCCACAGCCAGACTACCCCAGCGTGCACGGCCCCCGCGAAGAGCAGTATGTGAGTGAGGTCGCGCCCCCCGATGACGTCACCACCGTCTACAGAGATGCCGGGACCATCACTGATGTGTGTAACAGTACTGATCTTCCAGAGGTGGAGATCATCAGTCTGCTGGAGGAGCAGCTGCCCCACTACAAGCTGAGAGCAGACACCATCTACGGGTATGAGCACGACGACTGGCTccacacccctctcctctcccccgacACCAACCTGGACCTCACCGTGGAGCAGATTGAGGAGACTCTGAAGTATTTCCTTCTATGTGCTGAAAGAGTGGGCCAGATGACTAAGACGTACAGTGACATAGATGCTGTTACTCGTCTGCTTGAAGAGAAAGAACGGGACTTGGAGCTCGCCGCCCGCATCGGCCAGTCACTGCTGAAGAAGAACAAAACCCTCAGTGAGAGAAATGAATTCCTGGAGGAGCAAGTGGAGCACATTcgagaggaggttTCTCAGCTGCGCCATGATCTGTCTATGAAAGATGAGCTTCTCCAGTTCTACACTAGTGCAGcagaggagagtgaaggagattCGTCCACCTGTACCCCCATCCGCCACAATGACTCCACACTGTCGGTGCCAAGATACTTCCCCCTGGACTCACTGCAGAAGAAACTCAAAGACCTGGAGGCAGAGAACATCTCTCTCAGATCAGAGGCCAGTCACctggagacggagacagaggagTACGAGGAGAAGGAGCAGCAGCTGGTCAACGACGTCGTCAAAGAGCTGAGAGATGCCAACCACCAGATGTCCACCCTGGCGGAGGAGCTGGCGAGGAAGACGGACGACGGGTCTCGCCAGCAGGAGGAGATCACACACCTCCTGTCCCAGATCGTAGACCTGCAGAAGAAGTCCAAGTCTTATACAGTGGAAAACCAAGAGCTCACCCAGCATCTAGGGGCTGCCAAAGATGCCCAGCGCCAGCTCACTGCTGAGctgagggagttggaggataaGTATGCAGAGTGTATGGAGATGCTCCATGAGGCCCAGGAAGAGCTGAAGAACCTCCGGAATAAATCACTACCTCTCAGTACACCCCGACGCTTCCACTCCCTGGGCCTGTTCCCTATgGTGTCAGATGTTAACAGCATTGTTTATGCCGAGGGGGACTCTCTAGCTGCTGAGATTGAGGGCACCATGAGGAAGGGGCTGGCTATGGATGACCCGGAAGTGGAAGAGCAGAAgttgcaCCCCAAGCGTGTGTTTGAGACTGTGAAAAACGTTAACCTGATGCGTCAGCGCTCCTCTCTGGCCCCGTCTCCCATGAACATCCCCGGCTCCAACCGGTCGTCCTGTCTGAACTCTGGCCGCTCCAGCTGCCTGTCCACGCCCCGCTCCAGCCTGTACGGAGGAGATATGGGGAGCATCCTCATAGACAACCACACCAACAGCTTCATACTGGAGACGCCTGACCACAGtacGGATGACTCCAACAAGAAACCAGGGACCCCTGGAACGCCGGGCTCTCAGGATCTGGAAGCAGCCCTGCGACGTCTCTCCCTGCGGCGGGACAACTACCTGAGCGAGCGGCGGTTCTTCGAGGAGGAGAGGGATCGGAAGCTCCAGGGGCTGgtggagaagggagaggtggACAACGGCAGTATGACCCCCACAGAGAGCATCATGTCCCTGGGAGGAACCCACCTCTCTTCCATCTGGTCTGGGTACTCCTTCAGCTCCCGCTCCTACCTGCCGGAGAAGCTGCAGATCGTCAAGCCACTGGAAGGCTCGGCCACCCTGCACCAGTGGCAGCAGCTGGCTCAGCCCAACCTGGGTGGGATCCTGGACACGCGGCCTGGTGTGGTCACTAAGGGCTTCCGTCCTCTGGAACTAGACCTGGAGCACATGTACCTGTTCACTGACTTTGAGGAGGAGGACTTTGAGGTAGTGGAGGAGTCTGACCACCTGTCTGTCTCAGGCTCTACCCCCGGCTGTAGTGGCATCTCCATCCTCAGCCGGCAGGGCCTCCGTACccgctcctcctcctgctcctcctcctgcagCGGCAGATCCATCAACAACAACCTTCCAGAGGGAGAAGCCAGGGAAGAGGGCAAGACAGGCCCAGGCAGCACATCACTGTCGTCCCCTGCACCTCCAGACAGCGAGAACCAGGAGAACCAGGATCAGGCTGCAGCCGCTGACGGGGTGTCCGCCCACTACCCTGGTAAATGCATGTCCAACACCAGCTCCACCTATACCTTCACCACCTGTCGGATCATGCACCCCTCAGACGAGCTGACCAGAGTCACCCCCAGCCTTATGTCGGGTCCTACTGCCTCCTGCGTcatgaccagcagcagcagcgtcAGATCTACCCCCTGCTCAACCCCTTGCACCCCGCGCCGCCTCAGCCTGGCAGCCGAGTCCTTCACCAACCTGAGAGACTCCACCAAGACCATGAGCACTAGTGGAGGTCTGGTGCGGCTCCTCCAGGAGCGAGGCATCTCTGCAGCAGTCTACAACCCTCAGAGCTGGGACCGGGCAGACTGTAGCACCTCCATCCCAACTGGGGGGGTACCGTCGCTTCTACCGCCGCGGCCCCCTGACACCCTACCCTCCACGCCGCCCAACTCCCCAACCCACCGCTCCCTCTGTGCCAAACCCAGCAGCCCCGTGGGCCCCTTCGAACTCAGTCCCAGCGCCCCGCCCTATGACAACTTCCTGGCATCGAAGCCGGCCAGCTCCATCCTGAAGGAGGTGAGGGCAGAGGCCCAGAGCAGTGAGTCAGCAGACAGGGAGTGTCAGACTGACGTCAGCGTCCACAATCTGAAGCTGGTGGACAAGCTGAAGCGCTTCAGCGTGGTTGGGGCCGGCCCCTCTTTATCAGGGGCCACGGGGCCCACCATGCTGGGGCCCCTCAGCGGCCTCCACCGCCCTTCCCACTTCTGCCCTTCTGTGGTGACCAGTCCCATAGGGGGCCTCGGCCCCGCTCTGAACACAGGCATCCGCCGTAACCGCAGCTACCCGGCCGTGGTAGGAGCCGGCATGGCTATGAAGGGCCCGGGGCCCCACAGCCCCACAGACATGCTCCTGGCTTCTTCCTCCAAACTCCCCAGACAGACTAGTCTCAATGATGGGTGAATGAATGTTGACTTTTCTCTTCTGTCTGTCACCTGTCAGATGAGTTGGATGTATATATATCTGCTGTATGAGTCCCCGGTCTGTGACAAATCAACTCTGTGCCTGAAAGAGATGCCCTTTCTTTTTACAGTGCATTTTGTATCAATGCTaattattttgtcttcctttctttctttctctattctgtctctctctcctctcctctctttctctctcttctctcctgtcctctctttctctctcttctctcctctcctctctttctctattgtctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128660 lncRNA upstream 8052 10618191 ~ 10618534 (+) True G112694
TU128653 lncRNA upstream 18213 10607967 ~ 10608373 (+) True G112687
TU128643 lncRNA upstream 31974 10594319 ~ 10594612 (+) True G112677
TU128642 lncRNA upstream 33334 10593052 ~ 10593252 (+) True G112676
TU128633 lncRNA upstream 46313 10580057 ~ 10580273 (+) True G112667
TU128722 lncRNA downstream 12858 10723218 ~ 10729484 (+) False G112736
TU128723 lncRNA downstream 14688 10725048 ~ 10729484 (+) True G112736
TU128720 lncRNA downstream 15515 10725875 ~ 10730168 (+) True G112734
TU128678 lncRNA downstream 26249 10736609 ~ 10737693 (+) False G112699
TU128677 lncRNA downstream 26327 10736687 ~ 10808249 (+) True G112699
XM_036937587.1 mRNA upstream 223941 10366132 ~ 10402645 (+) False LOC110535244
XM_036937595.1 mRNA upstream 223941 10366132 ~ 10402645 (+) False LOC110535244
XM_036937619.1 mRNA upstream 223941 10366132 ~ 10402645 (+) False LOC110535244
XM_036937602.1 mRNA upstream 223941 10366311 ~ 10402645 (+) False LOC110535244
XM_036937607.1 mRNA upstream 223941 10380362 ~ 10402645 (+) False LOC110535244
XM_036937888.1 mRNA downstream 321632 11031992 ~ 11074284 (+) False washc5
XM_036937880.1 mRNA downstream 321635 11031995 ~ 11083098 (+) True washc5
XM_036937915.1 mRNA downstream 374001 11084361 ~ 11096664 (+) False nsmce2
XM_036937906.1 mRNA downstream 374015 11084375 ~ 11096664 (+) False nsmce2
XM_036937901.1 mRNA downstream 374015 11084375 ~ 11097464 (+) False nsmce2
TU127846 other upstream 850135 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 902715 9702040 ~ 9723871 (+) False LOC110506952
TU127567 other upstream 1182545 9440309 ~ 9444041 (+) False G111788
TU128663 other downstream 101158 10811518 ~ 10826063 (+) False G112697
TU129356 other downstream 530372 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 551194 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 551194 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 704571 11414931 ~ 11415178 (+) True G113285

Expression Profile