RNA id: TU129091


Basic Information

Item Value
RNA id TU129091
length 216
lncRNA type read_through
GC content 0.39
exon number 2
gene id LOC118937678
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10759359 ~ 10762238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACTACTGTCTCTGCTGTTAAGGTGCTGCTAGGTGGTAGTGATGCTAGGTGGTAGTGATGCTACTGTCTCTGCTGTTAAGGTGCTGCTAGGTGGTAGTGATGCTACTGTCTCTGTTGTTAAGGTGCTGCTAGGTGGTAGTGATGCTAGGTGGTAGTGATGCTAGGTGGTAGTGATGCTACTGTCTCTGTTGTTAAGGTGCTGCTAGGTGGTAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129061 lncRNA downstream 32671 10723977 ~ 10727044 (-) True G113004
TU129006 lncRNA downstream 119245 10640255 ~ 10640470 (-) True G112960
TU129005 lncRNA downstream 121015 10638384 ~ 10638700 (-) True G112959
TU129002 lncRNA downstream 124112 10635396 ~ 10635603 (-) True G112956
TU129001 lncRNA downstream 124742 10634723 ~ 10634973 (-) True G112955
TU129107 lncRNA upstream 1445 10763540 ~ 10765545 (-) True G113015
TU129118 lncRNA upstream 31796 10793891 ~ 10794318 (-) True G113026
TU129121 lncRNA upstream 39704 10801799 ~ 10802578 (-) True G113029
TU129123 lncRNA upstream 47492 10809587 ~ 10809812 (-) True G113031
TU129129 lncRNA upstream 67148 10829243 ~ 10829584 (-) True G113036
NM_001124345.1 mRNA downstream 41335 10715305 ~ 10718380 (-) True ccka
XM_036937571.1 mRNA downstream 148268 10504271 ~ 10611447 (-) False LOC110520767
XM_036937563.1 mRNA downstream 148269 10401919 ~ 10611446 (-) False LOC110520767
XM_036961607.1 mRNA downstream 405470 10316778 ~ 10354245 (-) True LOC118944052
XM_036937553.1 mRNA downstream 450422 10300705 ~ 10309293 (-) True LOC110507471
XM_036937853.1 mRNA upstream 49418 10811513 ~ 10826012 (-) True LOC110512108
XM_036937860.1 mRNA upstream 78471 10840566 ~ 11001122 (-) False LOC110511734
XM_036937865.1 mRNA upstream 78471 10840566 ~ 11001122 (-) False LOC110511734
XR_005035034.1 mRNA upstream 78471 10840566 ~ 11001122 (-) True LOC110511734
XR_005035042.1 mRNA upstream 117761 10879856 ~ 10881390 (-) True LOC118937685
TU129012 other downstream 41057 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 188907 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 412780 10346471 ~ 10346935 (-) True G112567
TU128425 other downstream 462716 10218152 ~ 10296999 (-) True G112491
TU128304 other downstream 756218 10000730 ~ 10003497 (-) False LOC110493960
TU129220 other upstream 258946 11021041 ~ 11021734 (-) True G113096
TU130068 other upstream 448378 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 548748 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 560946 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 587247 11349342 ~ 11352741 (-) False G113733

Expression Profile