RNA id: XM_036937860.1


Basic Information

Item Value
RNA id XM_036937860.1
length 5560
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110511734
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10840566 ~ 11001122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAACGTCATATCGTCATCAGACGCCGTAGGGTTGGAATGCCTCTGTGTGAGATCCAGAACAACTCACCAAACATTTTTTACAATTGGGATATGTTACGGATATGTTTCAAAAATGTATAACAATAATTTCCCGACGCTTCAAGAGACTGAGTTGTCTTTCCTTGGACTAGGAGAGTAAATCAGAGAGAAATAGTGTTGTGAATGCTGCCAAGTCGAATTGCTTTCAACTATTTATTGAAGTGCAGAAATTCATATGGACCAGAAGGCTAGATATCAGGCTTGGTACCCTCCAACATTATGTTATATCGTTCGTTTGGACCATGGAGTAGTCCAACACGGACCGTTATAATGTGAGTCCTGAATCTCTGGATGTTTGGGCAAGCTAGCCAAGTTGGCTACATTCTTGTCGCCCTGTGTAGCTGGCTAGAAAATTGTGATTGTGTGTTGCCGGAGCGTTAGGCTACAAAGCAAGAAAGTGTAAGTGAAAATACATGCTTCTTTTACATACAGGCAGATGAAACACTGAAGACGAATCCGCTAATAGCATAAAGAAATGTAAGGTCCGGGTGCATCTTCAATCCCTAACTTACCAGGAAGGTAGTCTACTCCTAAGTGCTGGAAGATAGCCACTGTTAGCCATAACTATTGACAAGGGGAGAAGTAAATGATCATTATAAATCGCCCACATGCGCTGGATCAATCGTCGGCTTGGGGAAAGGAATCAGAAGGTGGTGGACGTGTTGAGCGCTAAACCCTTCCTGGCTGCAGGAAGATGGCGCAGCCGTTCAATTGGAAGTAGTGGCGAGAGGAGTGAAACTTCATCGGGGCTCGTTGGATTTACTAGACATCTCGACCCTGATCGAAGGACACATGCAGGCCAAAAAACGGTACTTAATTCTGTTCTCCGCCGGTGCGTGTCTCATTCTGTTGTTGTACTTTGGAGGGATGCAAACCCCGCTATCCAGAAGCAACAACCGGCGTGATGACCGCAGCCTCGATGGACACCACGGGAGTCCCCAGTGGCACCACTTCTCGGGGTCCCTGCAGCCGTTCAGCCCCTGGGACCAAATGGAGACCGAGGAGTACAACGTTCACATATCGCCACGACAGAAGAGGGATGTCATTTCGGGAGTTTATAACGGGAAACGTTGCCGGATGGACTCCTGCTTTGATTTTTCCTTGTGCAAAACCAACGGATTTAAAGTTTACGTTTACCCGCAACAGAAAGGAGAGAAGATGTCAGAGAGTTATCAGAATATTTTATCTTCCATTGAGGCTTCCAGGTTCTATACGTCTGACCCGGGACAGGCTTGTCTGTTTGTCCTGAGTTTGGACACTCTAGACAGGGACATTCTGTCTCCGCAGTATGTTCACAACCTCAGAACTAAAGTCCAGAACTCGCATCTGTGGAATAACGGAAAGAATCACCTCATCTTCAACCTCTATTCGGGAACTTGGCCCGACTACACGGAAGATCTGGGCTTCGACTTTGGACAGGCCATGCTAGCCAAGGCAAGCATCGGCGCAGAGAACTTCAGACCCAATTTCGATGTCTCCATCCCTCTTTTTGGGAAAGACCACCCCAGCGCCGGAGGGGAGAGGGGCTTTTTAAAACACAACTCTATCCCACCGTACAGGAAATACATGCTTGTGTTCAAAGGGAAACGATACCTCACTGGAATCGGATCAGACACGAGGAATGCGTTATATCACGTCCATAACTCCGAGGACGTGGTGCTGCTCACCACATGTAAACACGGGAAAGACTGGCAGAAGCACAAGGATGCCCGCTGTGACCTCGACAACGCCGAATATGACAAACATGATTACAGAGAGATGCTTCACAACTCTACCTTCTGTCTGGTTCCCAGAGGACGACGCCTGGGATCCTTCCGCTTCCTGGAAGcactgcagGCTGCCTGTGTACCTGTGATACTCAGTAACGGCTGGGAGATGCCCTTCTCGGAGATCATCCACTGGAACACAGCAGCTGTGATCGGGGACGAACGACTGCTACTTCAGATTCCGTCTACGGTGCGTTCCATTCACCAGGACAACATCTTGTCTCTCAGACAGCAGACCCAGTTCCTGTGGGAGGCCTACTTCTCTTCTGTAGAGAGGATAGTACTCACAACACTAGAGATCATCCATGACCGGGTGCTCCAGCATGCAGCCCGTAGTAACCTGATGTGGAACAGTCTTCCCGGAGGTCTCTACTCCCTGCCTCAGTACTCCTCATACCTGGGGGACTTCCCTTTCCACTATGCTAAGCTAGGTATCAAGCCTCGTCCCAAGTTCACGGCGATCATACATGCTGTGACTCCCCTGGTCTCCCAGTCTCAGCCCATCCTCAAGCTACTGGTGGCTGTCTCCAAGTCCCAGCACTGTGTCCAGGTGATTGTCCTATGGAACTGTGACAAGCCCCTCCCGGCCAATCACCGCTGGCCTGCCACCGCCGTACCTGTCCTGGTCATAGATGGAGAGAGCAAGGTGATGAGCAGTCGTTTCCTTCCCTATGACACAATACCAACAGACGCCGTTCTGAGTCTGGACGAGGATacagttctctctactactgaGGTGGACTTTGCTTTCACGGTGTGGCAGAGTTTCCCAGAGAGGATTGTGGGATACCCGGCCAGGAGTCATTTCTGGGACAGCAACAAGGAGAGGTGGGGCTACACCTCCAAGTGGACCAACGACTACTCTATGGTCCTGACAGGAGCTGCTATATACCACAGatattaccactacctgtacACCAGTTACCTGCCGGCTAGTCTGAGGGGCCTGGTGGACCAGCTGTCGAACTGTGAAGACATCCTGATGAACTTCCTGGTGTCGGCCGTCACCAAGCTGCCGCCCATCAAGGTCACCCAGAAGAAACAGTACAAGGAGACTATGATGGTGCAGACCTCCAGAGCGTCTCGGTGGGCCGACCCAGACCACTTTGCCCAGCGACAGAGCTGCATGAATAAGTTTGCCAGCTGGTTTGGCAGCATGCCCCTGGTGCACTCTAATGTGCGTCTGGACCCGGTGTTGTTTAAAGACCAGGTGTCCATACTGAGAAAGAGATACAAGgacatagagagactataacctgcctgatcctctctgtctccatggtggagtggagagggacagagagagactagaaCCAGCctgatcctctctgtctccatggtggagtagagagagactataaccagcctgatcctctctgtctccatggtggagtgggacagagagagactataaccagcctgatcctctctgtctccatggtGGAGTGGgacatagagagactataaccagcctgatcctctctgtctccatggtggagtggagagggacagagagagactagaaCAGCCTGATCCTCTCTGTCTTCAtggtggagtagagagagactAGAACCAGCCTGATCCCCTGCTGCCCCCTAGAAGGACAGGAgagtagagggacagagagggactaCAACAAGCCTGAGACCCCTGCTGCCTCCTGGAAGGACAGGAGAGTAGTGGGatgggagacacacagagaccctcctagagagaagagaggaacaggggaagaaacgagaggagaggacagggcgCTGTGGAGCCAGGACGCCACGGTTGACCCTgccagagagaagggaggaacaggggaagaaatgagaggagaggacagggcgCTGTGGAGCCAGGACGCCACGGTTGACCCTcccagagagaagggaggaacaggggaagaaatgagaggagaggacagggcgCTGTGGAGCCAGGACGCCACTGTTGACCCTcccagagagaagggaggaacaggggaagaaatgagaggagaggacagggcgCTGTGGAGCCAGGACGCCACGGTTGACCCTgccagagagaagggaggaacaggggaagaaatgagaggagaggacagggcgCTGTGGAGCCAGGACGCCACGGTTGACCCTcccagagagaagggaggaacaggggaagaaatgagaggagaggacagggcgCTGTGGAGCCAGGACGCCACGGTTGCGTCTTCCACCCACACTCTCCATCTTTGTATGCTGTTGCTGGTGCCAACAGTGGTAACCGTGACAACCCAGGCTGTATTTTGGTAGGAGCTGTACACAGAAATTAAACTAGTTCATGCACAACTGACAACATGGACGtctggggagggggtgggggggggggggactttgtTCTAGAACTTTCTACATGAGGAGAGACCCTGGCTGATGCCGTCTCCTCAGAGTCAACACGACGGCCGTTATAGTCAAGGAGAGACCATGGCTGCAGTCCTAACGACGGTCTACTGGTAGACTGTCTCTACAGACTGTGTTCAGTCTGCCAGTGGTAAATCTCTCCCAACCTACTAAAAAAAACCCTACGATGAAACCAAGGGAGGAGTACTTGTTTAGTTATAGAAGTGAACCTTTGTTCTGTTTGGTTCTAAACACTATGCACAGGTTCAACACAATTGCTGCCAGAATCTGAAAATACTATTTGGCTGTGTTTTAGTTAGCTTTTATAGTAAAGAATGAATGTCCAGCATTACTGTCTCTACTGTGTCCAGCcttgggtggtggtgggggggggggggggtctgtgtttTAGTTAGTTTTTATAGTAAAGAATGAATGTCCAGCATTACTGTCTCTACTGTGTCCAgccttgagggggggggggggtggaggtctGTATTTTCCTGCTGTAACAGGCTAGAGATACAGAGCTCAACCACAGAACtgacatttcactgtacctgtagttaggactaatgttgtggttgttgtgctCTGGGAGTCCTGAGTGTGACTGGGCGTGAATCGATGCTCACCTTGGATGATTTGGAGATTTTTTAACTTGATTTGCCATTTTCTTTTTTCAATATTCTAGAGAAGTTCTAAAAAATTATCGCTcaccaaaaaaaatatatttttgagtgTCTGACTGAAGTACAATGAATCTTGCCCTTTGACCCCATCCTCCTTATCCCTTATTAGCATATTGATCCAGCTGCATTGTAAGGTTTAACAGTTGAGTTTCATATTGATCCAACTGCATTGAAAGGTTTAACAGTTGAGTTTCATATTGATCCAGCTGCATTGAAAGGTTTAACAGTTGAGTTTCATATTGATCCAGCTGCATTCCCTGTTCCACGTTCTACCCCTCACAATGTATTCCCCGTTCCACGTTCTTCCCCTCACAATGTATTCCCTGTTCCACGTTCTCCCCCTCACAATTTATTCCCTGTTCCACGTTCTCCCCCTCACAATTTATTCCCTGTTCCACGTTCTACCCCTCACAATGTATTCCCCGTTCCACGTTCTTCCCCTCACAATGTATTCCCTGTTCCACGTTCTCCCCCTCACAATTTATTCCCCGTTCCACGTTCTCCCCCTCACAATTTATTCCCTGTTCCACGTTCTCCCCCTCACAATTTATTCCCTGTTCCACGTTCTTCCCCTCACAATTTATTCCCTGTTCCAAGTTCTTCCCCTCACAATTTATTCCCTGTTCCACGTTCTCCCCCTCACAATTTATTCCCCGTTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129030 lncRNA downstream 802 10837642 ~ 10839764 (-) True G112983
TU129131 lncRNA downstream 7879 10832463 ~ 10832687 (-) True G113038
TU129130 lncRNA downstream 9918 10830410 ~ 10830648 (-) True G113037
TU129129 lncRNA downstream 10982 10829243 ~ 10829584 (-) True G113036
TU129123 lncRNA downstream 30754 10809587 ~ 10809812 (-) True G113031
TU129205 lncRNA upstream 133 11001255 ~ 11001531 (-) True G113085
TU129206 lncRNA upstream 1026 11002148 ~ 11002401 (-) True G113086
TU129209 lncRNA upstream 5570 11006692 ~ 11007318 (-) True G113089
TU129214 lncRNA upstream 7984 11009106 ~ 11009583 (-) False G113091
TU129215 lncRNA upstream 7984 11009106 ~ 11009583 (-) True G113091
XM_036937853.1 mRNA downstream 14554 10811513 ~ 10826012 (-) True LOC110512108
NM_001165087.1 mRNA downstream 32333 10736744 ~ 10808233 (-) False eif3h
XM_036937655.1 mRNA downstream 78328 10759359 ~ 10762238 (-) False LOC118937678
XM_036937671.1 mRNA downstream 78328 10759359 ~ 10762238 (-) False LOC118937678
XM_036937659.1 mRNA downstream 78328 10759360 ~ 10762238 (-) False LOC118937678
XR_005035048.1 mRNA upstream 57862 11058984 ~ 11059473 (-) False LOC118937688
XM_021586929.2 mRNA upstream 163991 11165113 ~ 11168638 (-) True lratd2b
XM_036937950.1 mRNA upstream 246915 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA upstream 246915 11248037 ~ 11261509 (-) False prelid3a
XM_036938010.1 mRNA upstream 396970 11398092 ~ 11402862 (-) True LOC110514530
TU129027 other downstream 32322 10736729 ~ 10808244 (-) True eif3h
TU129012 other downstream 121908 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 269758 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 493631 10346471 ~ 10346935 (-) True G112567
TU128425 other downstream 543567 10218152 ~ 10296999 (-) True G112491
TU129220 other upstream 19919 11021041 ~ 11021734 (-) True G113096
TU130068 other upstream 209351 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 309721 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 321919 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 348220 11349342 ~ 11352741 (-) False G113733

Expression Profile