RNA id: XM_036937915.1


Basic Information

Item Value
RNA id XM_036937915.1
length 859
RNA type mRNA
GC content 0.49
exon number 7
gene id nsmce2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11084361 ~ 11097464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaGACCACCTCAAGAGGAACCGGAAACGAGAACAAACTTTTCCCGGTCATTTTACGCAGCTAAAGTTGTTTAGTATTTTCTCTTATTTAGACACCAACACATTAAAGAACACGTCTACAACCTGTAAAAACCATCCCAGCGAGGAAAGTCGTGAGATACTTTCTCATGTTTTAGATTTCAACATGTCCTTGAGTGCAGTCCACTCCACACTGTCCAGTCTGAAAACATGTCAGGCAGATATTGGAACGGGGATGGACATCGTGACCGACGTCGCTCTGGACGTGGCAGAAACAGCAGGAACTGAGAATGATGCAGTCCTGAAGAAGCTGGAGGTGATGATGCTGGAGTGTGCCAAACTGGACCAGGAGATCAACTGCTTCGTTGAGGTGGTGAACTCTGTCACTGCAGAGGTGAGAAACCAGGAGCCCGAGGCCATGTTCAGACTGAAGTCTCTGGTGAAGGAGAAGTTCACTGAGAGACACGGCAGTCTGTCTGAGGGAGAGCTACAGAACCACGTCAAGCTGGTCAGCTTTAAGGAGAACGTCAGAAACGCACTCAAAACagTGAACCCTGAGGCAGCAGATAATATGGAGGAGGAGCTAGATGAGGATGTTGCTGTGACGCAGAGTGAGGTTAACTTCACCTGTCCCCTGACTCAGGTGGAGATGGTGAACCCAATGAAGAACAAGAAGTGTAACCACCACTACGACCGGGACGCCATTATGGGGATGATCAAGGCCAGGCAAAACCAGAAGAAGAAGTTACGCTGTCCGGTGGTTGGCTGTGGCAACACGGACGTGAAGcagggagacctgatcctagatcagattaTGAAGAGACAGATCCAGAAGAGGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129265 lncRNA upstream 4289 11079331 ~ 11080072 (+) True G113121
TU129263 lncRNA upstream 5058 11076350 ~ 11079303 (+) True G113119
TU129264 lncRNA upstream 6545 11077389 ~ 11077816 (+) True G113120
TU129253 lncRNA upstream 26487 11057232 ~ 11057874 (+) True G113111
TU129234 lncRNA upstream 53222 11030844 ~ 11031139 (+) True G113103
TU129269 lncRNA downstream 2125 11098789 ~ 11099070 (+) True G113125
TU129270 lncRNA downstream 3199 11099863 ~ 11100395 (+) True G113126
TU129278 lncRNA downstream 15943 11112607 ~ 11113035 (+) True G113132
TU129280 lncRNA downstream 19513 11116177 ~ 11117219 (+) True G113134
TU129346 lncRNA downstream 33920 11130584 ~ 11130864 (+) True G113188
XM_036937880.1 mRNA upstream 1263 11031995 ~ 11083098 (+) True washc5
XM_036937888.1 mRNA upstream 10077 11031992 ~ 11074284 (+) False washc5
XM_036937626.1 mRNA upstream 374001 10668176 ~ 10710360 (+) False LOC110507508
XM_036937927.1 mRNA downstream 106223 11202887 ~ 11211212 (+) True LOC110512016
NM_001193326.1 mRNA downstream 130833 11227497 ~ 11243074 (+) False fbxo32
XM_036937937.1 mRNA downstream 164248 11260912 ~ 11275480 (+) False elovl4a
XM_036937943.1 mRNA downstream 164890 11261554 ~ 11275480 (+) False elovl4a
XM_036937931.1 mRNA downstream 164892 11261556 ~ 11275480 (+) False elovl4a
TU128663 other upstream 258298 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1307910 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 1360490 9702040 ~ 9723871 (+) False LOC110506952
TU127568 other upstream 1640320 9440309 ~ 9444041 (+) False G111788
TU129356 other downstream 144068 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 164890 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 164890 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 318267 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 381312 11477976 ~ 11482741 (+) True G113313

Expression Profile