RNA id: XM_036937927.1


Basic Information

Item Value
RNA id XM_036937927.1
length 2307
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110512016
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11202887 ~ 11211212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggggggcgagagagagagagatgactgggTGAATGTTGCTGATAGCAGAGCTGAGTGAAAGGACACCTACCTCAGACGCATTAGAAGACTGAGACAagAATGGACCAATCAAAGCCACACGTAGATGTGTTCCACTACAGGAACGAGGAACAGTCGTCCTACCTCCTGCTGCAGCTGAACCGTCTGAGACAGAACAGGGTCCTTACCGACGTGCTGCTCTGTTCAGATAACACAGAGATCCCCTGCCACCGTAACATCCTGGCCTCCAGCAGTCCTTACTTCACGGCCATGTTCTGTCACCACTTCCGAGAGACGAACCAGGAGAAGGTGGATCTGAAGgGGATCACCTCCAGCATCCTGAGTGACATCGTCGACTACGTCTACACAGGGGTCATAACCATCACCATGGAGATAGTACTGCCCCTTATGCAGGCTTCCTCCATGCTCCAGTACACCAGGCTGTTCGAGGCCTGCTCCTCATTCCTGCAGGAGCAGCTGAGCCCAGACAACTGCCTCAGCATGATGCGGCTGGCAAAGATACTACACTGCAACAGCCTGAAGGAGAAGGCCAGGGAGATGGCAGTACAGAGCTTCTCCGACGTCTCTACCTCTGAGGACCTGTGTGAGCTCTCCTTATCTGAGCTGATGGGTTACCTGGAGGATGACTGGCTCTGTGCTGAGGAGGAGCAGgTGTTCGAGACGTTACTGGCGTGGATCCACCACGACCCGTTCTCACGGCGCGGCGCCATCTCCGACCTCTTCAGGAAGGTGCGTCTGCGCTACATCCACCCCACCTACCTGTTCCAGTTCATCGCCAGCGACCCCCTCGTCCAGTCCTCCACCCTGTGCACCGAGGTCATCGAGTCCGTCCGCCGCCTCATGTTCTCCATCACCACTAAGTGTGGGTCGGACCTCAAGCCCCTGTGGGTGACCCCGCGGCGCTTCACCTGCCGGGAGACCCTGGTTCTAGTTGGCGGCCGCAAGAACAACGAACAGACGTCCCGCGAAGCACTCCTGTTCGACGAGAGGACTCAGCGCTGGCAGTGGCTGGCCAAGCTGCCCTTGCGACTCTATAAGGCCTCCTATGTCTGTATCCACAGTATCCTGTATGTCCTGGGAGGCCTCACCATGAACACCAAGCACAGAGTGGTTAGCACCACTGTCTATACGTTGTCTCTGAAGACCAACCAGTGGAGGACGACCGAGCCCATGATCCAGCCGCGCTTCGCCcaccagtctgtctcctacctgCACTTTATCTTCGTCCTGGGGGGCCTGGGGCCGGAGAAGCAGGCGTGCGACACGGTGCAAAGGTACAATAGTATGTTCAACCAATGGGAGGCTATGGTTCCCATGCCGACGGCTGTGCTACACCCGGCGGTTGCCGCTAACGATCAAAGAATCTACATGTTCGGGGGAGAGGACGCGATGCAGAACCCTGTCAGGATGATACAGGTGTATCACATTGGCAGGAATATGTGGTCTACGATGGAGACCAGGACAGTGAAGAACGTTTCTGCACCAGCAGCAGTCATCGATGACAAGATCTACATTATCGGAGGCTACACCAGAAGAATGATCGCGTACGACACCAAAGCCAACCGCTTTACGAAGTGTGAGAACCTGAAGCAGAGGAGGATGCATCACGCCGTGGCGGTGCTCGACGACAAACTGTACGTGACCGGAGGACGCTTCATCAACGGACACGACGTCATAGAGGACTCCGACAGCTTCGAGTGCTACGACCCGAAGACTGACGCGTGGACGACGAAGGGGACGTTGCCGTACAGGCTGTTTGACCACGGTTCTCTGTCCCTGGTGTGTGTCTCCAACAAATCCAAGCCTCCCTGAGTGTgtgttgtggatgtgtgtgtcCCCTTCAGATGATACTCTGCCCGACCAAGCAAAAAGACATTAACTGCTCATAgcgtggaactgagaaaaatACCTTTTATCTACCTTGGTGTCACAGTATCTTCATGCAGTTACTGGCTAACATGACCCCCCATTTTCTCCTGAACACTATACAACcgaggcaggatacttgtccacatgattaagaATGTATTTAATGAAGCAAAAAAATTGACATGAACTCATTTTGGACCAAATGAGCAGTTATTGCCTTCTTGCATGGTAGGGCAATACTGTCTATACATATGTTGCTGCTCAGATGTGACTCTGACCAACACAGATGTTGCAAAGAACATCTCTGATGTCATTTCCTGTCCCacactgttacggtgagtgaatgaggacccaaaagcgaactaacttaaacagagcttctttaataaccaaaca

Function

GO: NA

KEGG:

id description
K13959 KLHL38; kelch-like protein 38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129389 lncRNA upstream 30080 11172577 ~ 11172807 (+) True G113210
TU129388 lncRNA upstream 30538 11172041 ~ 11172349 (+) True G113209
TU129387 lncRNA upstream 31246 11171378 ~ 11171641 (+) True G113208
TU129386 lncRNA upstream 31774 11170905 ~ 11171113 (+) True G113207
TU129380 lncRNA upstream 36028 11165187 ~ 11166859 (+) True G113205
TU129416 lncRNA downstream 19354 11230566 ~ 11231000 (+) True G113233
TU129417 lncRNA downstream 19962 11231174 ~ 11231475 (+) True G113234
TU129420 lncRNA downstream 22650 11233862 ~ 11234335 (+) True G113236
TU129359 lncRNA downstream 31380 11242592 ~ 11243069 (+) True fbxo32
TU129367 lncRNA downstream 32498 11243710 ~ 11245562 (+) True G113199
XM_036937901.1 mRNA upstream 105423 11084375 ~ 11097464 (+) False nsmce2
XM_036937915.1 mRNA upstream 106223 11084361 ~ 11096664 (+) False nsmce2
XM_036937906.1 mRNA upstream 106223 11084375 ~ 11096664 (+) False nsmce2
XM_036937910.1 mRNA upstream 106223 11084383 ~ 11096664 (+) True nsmce2
XM_036937880.1 mRNA upstream 119789 11031995 ~ 11083098 (+) True washc5
NM_001193326.1 mRNA downstream 16285 11227497 ~ 11243074 (+) False fbxo32
XM_036937937.1 mRNA downstream 49700 11260912 ~ 11275480 (+) False elovl4a
XM_036937943.1 mRNA downstream 50342 11261554 ~ 11275480 (+) False elovl4a
XM_036937931.1 mRNA downstream 50344 11261556 ~ 11275480 (+) False elovl4a
XM_036961612.1 mRNA downstream 63469 11274681 ~ 11277557 (+) True LOC118944054
TU128663 other upstream 376824 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1426436 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 1479016 9702040 ~ 9723871 (+) False LOC110506952
TU127568 other upstream 1758846 9440309 ~ 9444041 (+) False G111788
TU129356 other downstream 29520 11240732 ~ 11243069 (+) False fbxo32
TU129360 other downstream 50342 11261554 ~ 11273000 (+) False elovl4a
TU129361 other downstream 50342 11261554 ~ 11272897 (+) True elovl4a
TU129492 other downstream 203719 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 266764 11477976 ~ 11482741 (+) True G113313

Expression Profile