RNA id: TU129360



Basic Information


Item Value
RNA id TU129360
length 1145
RNA type TUCP
GC content 0.46
exon number 7
gene id elovl4a
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11260912 ~ 11275480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAACGAGTCGCACCGGAGAACCGTTTCCAGCTGCAGTGACAAGGGTTGCGGTCATTATGTTGCCTCTATAACGGATTTCTCTGTTCCGCCGTTATGTTAACTAGTCTTCTATAGGAACATAACCACGGATATAACAAATATATATTAGGGTTTTTAGTAGCCGAAACTGTGGATCTGTTAGATTACATGACCTTGTATTGAATGTCACAATAAAAGGACCGTATATAGCCCAATCTGTCGACACGGGTAACTCAGATACTGGCCTGCAAAGATGGAGCTCACCACACATCTGATAAATGATACCATTAATTTATATAAATGGGCCCTTACCATCGCAGACAAGCGAGTGGAGAAATGGCCCCTGATGGACAACCCACTCCCAACGTTGGCCATCAGTTCCTCCTACCTGCTGTTCCTGTGGCTGGGGCCCAAGTACATGGAGAACAGAGAACCCTTCCAGCTCAAGAAGACACTCATCTTCTATAACTTCAGCATGGTCATCTTCAACTTCTTCATCTGCAAAGAGCTCTTCCTGGCGGCTCGGTCGGCCGGATACAGCTACATCTGCCAGTCTGTTGACTACTCAGACGACCCCAATGAAGTCCGGATAGCAGCAGCGTTGTGGTGGTATTTCGTCTCTAAAGGAGTAGAGTACCTGGACACGGTGTTCTTCATCCTGAGGAAGAAGTTTAACCAGGTCAGCTTCCTACACGTCTACCACCACTGCTCCATGTTCACCCTCTGGTGGATCGGCATCAAGTGGGTCGCTGGAGGACAGTCATTCTTTGGTGCACACATGAACGCAGCCATCCATGTCCTGATGTATCTGTACTATGGGCTGGCCTCCTTTGGACCCAAGATCCAGAAGTACCTGTGGTGGAAGAAGTACCTGACTGTCATCCAGATGGTCCAGTTCCATGTTACCATCGGCCACACTGCTCTGTCCCTCTACATGGACTGTGAGTTTCCCCACTGGATGCACTATGCCCTTATCTGCTACGCCCTCACCTTCATCGCCCTGTTCGGTAACTTCTACTACCAGACGTATCGCCGCACGCCGCGCCAACCCAGGGAGCCCAAGGCCGCCAAGGCTCTGTCTAACAACTGGGTCTCCAACGGGCTGTCCAAGGGACTGGGGAACGgag

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU129426 lncRNA upstream 1495 11259739 ~ 11260059 (+) True G113241
TU129423 lncRNA upstream 7050 11253868 ~ 11254504 (+) True G113238
TU129369 lncRNA upstream 14198 11245613 ~ 11247356 (+) True G113200
TU129367 lncRNA upstream 15992 11243710 ~ 11245562 (+) True G113199
TU129359 lncRNA upstream 18485 11242592 ~ 11243069 (+) True fbxo32
TU129362 lncRNA downstream 121 11273121 ~ 11278179 (+) False G113197
TU129364 lncRNA downstream 121 11273121 ~ 11300282 (+) True G113197
TU129448 lncRNA downstream 31280 11304280 ~ 11305549 (+) True G113256
TU129450 lncRNA downstream 38160 11311160 ~ 11312084 (+) True G113258
TU129459 lncRNA downstream 63514 11336514 ~ 11337268 (+) False G113265
NM_001193326.1 mRNA upstream 18480 11227497 ~ 11243074 (+) False fbxo32
XM_036937927.1 mRNA upstream 50342 11202887 ~ 11211212 (+) True LOC110512016
XM_036937901.1 mRNA upstream 164090 11084375 ~ 11097464 (+) False nsmce2
XM_036937915.1 mRNA upstream 164890 11084361 ~ 11096664 (+) False nsmce2
XM_036961612.1 mRNA downstream 1681 11274681 ~ 11277557 (+) True LOC118944054
XM_036937977.1 mRNA downstream 34174 11307174 ~ 11324804 (+) False LOC110520740
XM_036937987.1 mRNA downstream 34920 11307920 ~ 11324807 (+) False LOC110520740
XM_036937979.1 mRNA downstream 34931 11307931 ~ 11324804 (+) True LOC110520740
XM_036937965.1 mRNA downstream 55026 11328026 ~ 11373000 (+) False soga3a
TU129356 other upstream 18485 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 435491 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1485103 9774203 ~ 9776451 (+) True LOC118937659
TU127811 other upstream 1537683 9702040 ~ 9723871 (+) False LOC110506952
TU127568 other upstream 1817513 9440309 ~ 9444041 (+) False G111788
TU129492 other downstream 141931 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 204976 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 435603 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1447408 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1447730 12720730 ~ 12721315 (+) True G114244

Expression Profile


TU129360 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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TU129360 Expression in each Bioproject

Bar chart with 15 bars.
TU129360 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.