RNA id: XM_036937979.1


Basic Information

Item Value
RNA id XM_036937979.1
length 3060
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC110520740
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11307174 ~ 11324807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCGTGCGTGCGGGCTTGTAGCCTAGTCTGATGGTGTTGGGAGATTCAAATGCTGGATTTAGATGGTTTACTTCTACTGCAACCTCATTGTGGGTGGATTGGGCCAGTGTTGTTATGAAGACAGAAGAACACAGCGCAGGGAGGGACTGTCTGGGTGATGTGATGTGGATGTAGACTAGGCTATTGAACTGAACGTCCATCCTCTCTGTATGACACCATGAACCCTGCCTCGGGCGGCGCTGCCGACTCCCGCAGCCAGCTAGACAATAGCAACAGAAAGCAGCAGCAACAGCGCGCTTCCTCCCCGGCTGGCGGCAAAGACATTGGATCTAAAGAGACACCGAAAAGCAGCACTCCGTCAAAGATCATCACGTCAAAGCAGTGCGGAGGAGGGAGAGGCAACCGCGGCAGCTCCCCGGTCTCAACGGCTACCAGCAAAGACAGACTGTCTTCTTCTTCTAAAGGCGCGGCAAGCGCGGCAGGCGCGGCCCCTGTCCAGTCCGATGGTGCTGAAATCCATACGTTGACCAGGGCGGCGGCGGCGGCTGGGAGCGGCAGAGGAGCGGCAGAGGAGCGCAGTAGTCCGTCTGAAGACTCGCGTTGTACTGATATATCGTGTTTGAAGGGGGATACGACACGGGTTGTTTCTGATCAGCCTTGTTCATCCAAATCTCCTAAATTGAAGAACAATAACccgagaggagggggaggagaaggcgAGGCTAGCAGCACAGCGACCGGTAACAAAAAGAGCTCCGGCAAGAGCAGTGTGGGCTGCGGCCCTGGCTTCTGGAGAGAGGGATGTTTGCAGTCGGAGCTGATCCAGTTTCACCTGAATAAAAGCTTAAAGAAAGGAGGAGGAAAGATGAAGGCGAAGACACCGTCTCCCCCGGAGCCGGTCACGGAAACGGCGGAACCAGAGGATCTCTCCCCTGAGGCCATCGTTAACGAGCCCGAACCGGTACCTGAGCCCGACCAGCTATTTCAGGAGGAGATAGAGAAACTGGAGGATGAAAACGATGAACTAAAGACTGAGATAGAGGAGATGAGAGCGGAGATGGACGAGATGAGAGACACGTTCTACGAAGAGGACGCGTGCCAGCTGCAGGACATGCGTCGCGAGCTGGAGCGAGCCAATAAGAACTGCCGGATTCTCCAGTACCGTCTGAGGAAGgcggagaggaagaggatgcgGTTCGCTCAGACCGGAGAGGTAGACGGAGAGCTACTGAGGGCCCTGGAGCAGGACTTGAAGgtAGCGAAGGACGTGTCAGTGCGTCTGCACCATGAGTTGGAGAATGTGGAGGAGAAAAGGACGAAGACGGAGGAGGAGAACGAGAAACTAAGGCAAAAGCTGATAGAGGTGGAGGTGACCAAACAGGCCCTGCACAACCAACTGGAGAAGGCCAAGGAGCTGTcactgaagaggagaggaggcagggatGTTCAGAAGGAGAAAAGGATTCCACAGACTCCAATAGAGgAGGACAACGAAGATCTGAAATGCCAGCTAGCGTTCATCAAGGAGGAAGCCATTTTAATGAGGAAAAAAATGGCTAAAATTGACAAGGAGAAGGACCGGCTGGAACACGAGCTGCAGAAGTACCGCTCTTTCTACGGGGATGTGGACAGCCCTGGGCCCAAGGGAGAGGCTGGAGGACCAGCCACCACCCGGGAGTCAGAGCTGaaactgagactgagactggtgGAGGAGGAAGCCAACATCCTGGGGAGGAAGATCgtagagctggaggtggagaatAGAGGACTGAAGGCTGAACTGGAGGACATGAGAGACAGGGATGAGGTGGCAGGAGGCTCGGCTGAGCATGGCTgcagcagggagcagggagaggaacTCAGGGAGCTGAGACAGCAGCTACAGCTGGTGGAGGACGAGGCAGAGCTACTTAGGAGGAACCTGCAGGACGCAGAGGAGGACAACAACAAGGTGACGGGGGAGCTGAACAAGCTGAAGTACAAGGAGGGCTCCAGGCACGGCGCCGGGGGTGGAGGAGGTGGCGCCGGGGCGGCTGCAGACCGGGCCAAGGTGGAGGTCCTGCAGGAGGAGCTAAAGGCTGCCAGGCTGCAGATCAACGAGCTGAGTGGCAAGGTGATGCAGATGCAGTATGAGAACCGGGTCCTGCTGTCCAACATGCAGCGCTACGACCTGGCGTCACACCTGGGCATCAGGGCCAGCCCCCGGGAAAGTGACGCAGAGAGTGACGGAGGAGATGACGCCTCCACCTCATCGCGCTTCCCACCCCACCGTAAACGAGAAGGCCCCATCGGAGGGGAGAGCGACTCGGATGAGGTGCGTAACATCCGGTGCCTGACCCCAACCCGCACCCTCTACTCCCCCGAGGGCCGTTTCCTCCCTCGCAGCCTGAAGGACCGGCAGCAGATGGTAGACATCCGTATAGAAGCAGAGCGGCTGGGCCGGACCGTCGACAGGCTGATAGCAGACACCAGCACCATCATGGCCGAGGCCCGGGTCTATATGGTCTCCAACGGGGAGCTTTACGAGGAGGAAGGGAGCACCGTCAGGGAGCACGAGTTGTTGTACAGGATCACCGCTCAGATGAAGGCCTTCAGGAAGGAGCTGCAGGGTTTTATAGACAGACTGGATGTCCCCAAGCCAGaggacaaagaggaggaggaaccaCTGTCCATGTTTCAGCCCATCATTCTGCTCATCCTCATCCTCGTCCTGTTCTCTTCACTCTCCTACGCCACCATCTTCAAACTCGTCTTCCTCTTCACTCTCTTCTTCGTCCTGTAACGTCCGTCTCACTTTGACATAGACACATATTTTTGTTtagtcatattttttatttatttattttatttttattttggaaTATTCCCATCTAAGGTCACAAGTGATACGGGACACTATTCCACGTTTCAGCAGTTACTATTTACAAGCTTTCAAcacacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacacACCTCTGGGGCTgagacactggaggagaccacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129448 lncRNA upstream 2382 11304280 ~ 11305549 (+) True G113256
TU129364 lncRNA upstream 7649 11273121 ~ 11300282 (+) True G113197
TU129362 lncRNA upstream 29752 11273121 ~ 11278179 (+) False G113197
TU129426 lncRNA upstream 47872 11259739 ~ 11260059 (+) True G113241
TU129423 lncRNA upstream 53427 11253868 ~ 11254504 (+) True G113238
TU129459 lncRNA downstream 11710 11336514 ~ 11337268 (+) False G113265
TU129461 lncRNA downstream 11710 11336514 ~ 11337268 (+) False G113265
TU129463 lncRNA downstream 11710 11336514 ~ 11337268 (+) True G113265
TU129479 lncRNA downstream 36508 11361312 ~ 11368100 (+) True G113276
TU129443 lncRNA downstream 46837 11371641 ~ 11372997 (+) False soga3a
XM_036961612.1 mRNA upstream 30374 11274681 ~ 11277557 (+) True LOC118944054
XM_036937937.1 mRNA upstream 32451 11260912 ~ 11275480 (+) False elovl4a
XM_036937943.1 mRNA upstream 32451 11261554 ~ 11275480 (+) False elovl4a
XM_036937931.1 mRNA upstream 32451 11261556 ~ 11275480 (+) False elovl4a
NM_001193326.1 mRNA upstream 64857 11227497 ~ 11243074 (+) False fbxo32
XM_036937965.1 mRNA downstream 3222 11328026 ~ 11373000 (+) False soga3a
XM_036937970.1 mRNA downstream 3222 11328026 ~ 11373000 (+) False soga3a
XM_036937958.1 mRNA downstream 3225 11328029 ~ 11373000 (+) False soga3a
XM_036937962.1 mRNA downstream 3228 11328032 ~ 11373000 (+) False soga3a
XM_036938002.1 mRNA downstream 68138 11392942 ~ 11397308 (+) True echdc1
TU129360 other upstream 34931 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 35034 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 64862 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 481868 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1531480 9774203 ~ 9776451 (+) True LOC118937659
TU129492 other downstream 90127 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 153172 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 383799 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1395604 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1395926 12720730 ~ 12721315 (+) True G114244

Expression Profile