RNA id: XM_036937958.1


Basic Information

Item Value
RNA id XM_036937958.1
length 6329
RNA type mRNA
GC content 0.54
exon number 9
gene id soga3a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11328026 ~ 11373000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATTCTGCGTGTGAAGCCAATAAACAACCGTTAGGCTATTAGGCTATAACCAGCGAGCTGAACACATTTATCGCTATGGTCCCGGTCACAACCCGTTTGGATAGCCTTAGTCTACCACTTGAGTCACATTCCGCAGTCACAACTTCTTTAGAGCACGCGACACAGTGGTCCCGGTAGTAAACAGACGTGATTAATACCTCTTCAACCGGGTGGCTTCCCGCGCGACCTACTCCCGGTTCCGTTACTTAGTAGTCTACGGCACACAGTGGGGTTATTGAGTAAAAGGATATGCGTGGTTACAGGGTGTAAAAATAGTCCTCAGCTCTTACATCAGTGGGCTATGTGTATTATTGGGTACTCGTCCTGTCCACGTAACAACAACCTACTGGGTGTTCTTCACCCACACGGTGCACTGCACAGGGCGGTAGCCTAGGCGAAAGCCGTAGCCTTTTACTATACTTTTCAATGTAGGAATAATGAACAGCCTACATAAGTTTGGATAATAAATCCAGATAGCATCAGTAGAGTTCCGCCGCATAATGACCGATTGTTGACCTTGGCGCGGCGCGGTGACATGGAAGGGACAAATACGCACATCGCTGCATGGGCTGGAGCTGCTGCTGGTTCAGCGTTGAGAGACACGGACACCGCCGGGGAAATCGCCGGCTTCGGATAattatgctgctgctgctgcaactACAACCGAAGGCACCGGTCAACCGAAGGCTGTCAtcagtttgtgtttgtttgtctctgCACGTTGAGAAATGTGGAATGCTGCGTTCGGAAATGGGTCAGATTTGCGTAGTGGAGGAGGCGGCGGCGGGTACGTGCCAGCGCAGGACTGGGAATTCGTTCCCTGCTCGCTtctggaaagagaaagagagagggacagagggaagagTCGCAGCCCGTTCAGGACGTTCTCCTCCCCGCCAACAGTCACTCAGTTCTACGAACAGTCTCATCCTGGAACGGTTGGAACATCACCGGAGCTTCCACGGGGACAAGTTCGGGCGCAAGAGCCAGGGACTCATCACTCCCGTCTGAAAAAGAAGTTTGAACACTTTAACAAACGCCACGGACAGGACAAGGAAGAATGGATACGAGAGAAGGAGATACTTTTAAGACAAGTTGCTGAGATACAAGGTGGGGAGAACAGAAGGATTTTGTTGGATCTGAAGactgtagtggaggaggtgcagatagaggtgaagagagaggagtcGAAGAGGTGCGAGCTACAGCTGCAGTACACTAAGGACAGATGTGCCTGGGAACTGGAGAGAGCTGAGCTGAAATGCAGAATCGCACAGTTGGAGGCTAGAGGAGGTCCTGTCGTTGAGCTGGGGCTGAGAACTCAGAGTCCAGAGCCCAGGGAGAGTCCTCTACAGCGGGGGGACAGAGAGCAGCAGAGGAGGCTGCTGGTCGACACCCACACGGCCGCCATGGACCTGCGCTGTCGGCTGGAGCTCAGCGAGAAGGGCTGGGTCCGAGAGAAGTCTGAACTGATGGAGAGATTCAACTCTGAgaggaaggagtggGAGAGCCAGCTGGGAGACAtgcagagGAAAatagaggagATGTACAAGGAGGTGAAGGTGAGGCGCGAGGTATCtggggagatgagagaacctgTCGGAGAGATTACAGAGGAAGTCACCCTGAATGTCAGCGTACATACCACCAGCACAGGATCCAGCATGCTTAGCGACAACTCGACTTCCGACccccagagcagcagcagcagccaatcAGAGCCCACCAACCAACGCGGCTCCTACCCCCGTCGTCACCGCAACGACGACTTCGCCGCCCACAGAAACCGGTCGGATCACCGTGGCGACAGAGGAAACCCCCGTAACTATGACGACTGTGTCGGTAACCAGGAAGTGGACATGGCGGAACTGGAGGCCATCCTGCGAGGGGTTGACAGAGACTCTCCCTCTAAAGGGGGTATGGTTAATGTCCGTCGCTCCTCCCACGGTGGATCTAGTGTAGGAGTGACCCACAACACAGGGATGATCTCCGGGACATGGAGTGACAAGATGGAGAATACTACAGCCCTCAATGCCgccCTGAAGGAGATAGCCCGTGTGAGTGAAGAGCTGTGTAGCTACCAGGATGAGATCAGCAGGAAGTCCGGAGGGGACAAGAGGGGTCGAACCGAGTCCTCGTATTTCCCCGAGGTGGATCATGTTACGaccagagagagaatggaggaccCTGCCTTCAACCTGACGCAGCTGGTAGCTGACCTCAGGGCCCTGGAAGAGGAGAACTGGCTGTCCATCAGGAAGGACCCCACCAGGGGCCCCAGTCACCGCAAGGACCCCGACAGGGGCCCCAGTCACCTCAAGGAGCCCGACAGGGGCCCCAGTCACCTCAAGGAGCCCGCCAGGGGCCCCAGTCACCTCAAGGAGCCCACCAGGGGCCCCAGTCACCTCAAGGACCCCGCCTGGGGCCCCAGTCACCTCAAGGACCCCACCAGGGGCCCCAGTCACCTCAAGGACCCCACATCCAAGCcctctgagagggagagagaagcaccTCCGCTCCCCCCTCTGCTGGttcctcctcctatccctcctcgGACAACATCATGGTACCTCGCCAGCCCCTCCCCTGAACTACAACTACACGTCCCAGAATCCCTCAGTGGCTCAGGCAGGAAGTGCCACAGCCCCTGTCTCCTGTTAGACAGGAAGTGCAGCAGCAGCCCATCGATAGTGAGGAAGTTCGAGGCGATGCTGCAGGAGAACGAGGGGAAAGTTCTGACGGAGGCGGGGTTTACCACCTGTGCTGTTCCCGTTAACTCCCGTTGCAACGTGGGCTGTTGCCACAACCGCTGGTCCTTCGGCAGCAGCAAGTCGTCCACCTACGTGCCTGTCCAGAAGAGCCTGTCTGAAGTCAACATAGTGAGTGCTGCTGGGAAGGACTTGATCCACGACTACAGGCCCATTGAGAAACCTAGTCCTAGAAGTCCTAgaagccctgagagagagagtcatatacAACCTGGAAACAAAGACCTAACAGTTTCACACATCTGTCTTGACCTTACCTTAGAGTTACCCCCTCCAGGCTCCAACCCTCCAGGCTCCAACCCTCCAGGCTCCAACCCTCCAGACTCCAACCCTTCAGGCCACAGTAGGAATATGATGCTGGAACAGGCCACTGCTGAGTTTAACAGGACTCTCTTCCAGGCTGAGATGGGTCGAGGGATGGAGGACGATGATGTAGAGGACAGTTTTACATCAGCGGGTGTCTCTAAAAGGGGCATACCAGACGGTACGACGGTATGTGGCGAGGTCACACACGGGGTCGACAGGGAGACGAACTTTGACCTCCCGCCGCGGCACGCCACAGAGGTCAGACAGAAGGAGGTAATCTGTGACATCACAGCTCAGAAGCTGAGTTCAGGGATCAAACTGAGCCAGGCCCTGCCCCCAACTGACACTCATCCAGGGGTCACCGTCAGGACCTTTGACCCCCCTGCCACCTCTGACCTTTCACCCCAACGCCCAGAAGTTGCGTTTAGGAACATGCCTTCTAACCCGGCAACACGCTGCCCTGAGGTCAAACACAAAGCTGGACCCCCCAACAGCCTGTCTAAGCCCACACTGCACAGGTCCATCTCTAGTGAATACAAGCAGCCTGCCCAGACTACACACACGGCTCCAGGACCAGAGGTGAGTGCCAGTCCTAAGAGGGACATCACGGCCCAAGGAGCGAGGCCTCATTCCGTTAAGTCATGCCCAGCGCCCCAGCCTCCTACAAACCTCAGGCCGAAGCAGGTTGGGCAACCTGGGTGTCGCTCAACCACAACGCAGGACATCCTTAAAGCTGGATCTGTGGGGTCAGGACTCCGTGTGCCTGGGGGGTCAGGACTGCGTGTGCCTGGGGGGTCAGGACTCCGTGGTGTAATGAGCGACCAGCCCTGGAAGCCCTTGACTCTGGCTGCGTTACGTCCATCTGACTCCAGGTCTAATTACGGAGCTGTGGAGAGGATCCTGAAGAGCTATGAGAACACTGCCTGGAGCCAGCGGTACCAGAACCATACCCAACCCACTGAGTCCAGCCCTAACCCTGGTCTCAGTCCCAGCCCTAACCCTGGTCTCAGCCCCAGCCCTAACCCTGGTCTCAGCCCCAGCCCTAACCCTGGTCTCAGCCCCAGCCCTAACCCTGGTCTCAGCCCCAGCCCTAACCCTGGTCTCAGCCCCAGCCCTAACCCTGGACCCAGCCCTAACCCTGGTCTCAGCCCCAGCCCTAACCCTGGTCTCAGCCCCAGCCCTAACCCTGGTCTCAACCCCCGTCTCAGCCCCAGCCCTAACCCTGGACCCAGCCCCCGTCTCAGCCCCAGACCAAACCCTGGTCTcagccctagccctaaccctggtcccagccccagccctaacCCTGGTCCCAGCcccagacaggaagaggaactcaTGGATCTTCTGGAGGAGATGATGGACAAGGATTACTGGGATCAGTCAGGCCCTGCCTCTGGACACtcctcccacacacactctcaccaCAGCCAGCTGACCAGCTCCCACAGAGAGACAAGGCTAACCATGCAGgAGTGTAAAGTATCTTCCAGCTCCTCTTCAGTCCAGAAGAATTTCTCTCGTCCGGCCTGTCCAGCCAACCGCCGCCCCCCGTCACGCTGGGCTAGTTGTtccccctccacctcttcctcctcctcctcctcctccacccctataaACCAGCCCTCTTCCGGCTCCGCccacaaacacacctcattctCCTACTCAGCCTATCACACGGAGACAGTCATCATCTGACCCCCAGCTGACCCTGTGTCTGAACCAATAAGATGCCTTTCGTTACTGTACGTACTCTGACATTTCTGACATCCTTCCTTGATTCCTTCACATCGAAGGTACGAGtcgggtgggggtggggggttggggggggatgggggggacCTTTTCCTCCACCGCCTCTATACGTACCGAGACTGTTACTTCTACAACCAATCAGACGATCCAAGAGCTTCAGCTGTGGACCAACGTGGAGTTGGTTCACCGATCATCTTCAGAATGTAATCTCATCGACTAGCGGAGGAGACGTTTCATGTATTCTACTATAGCAACTCCAGGATCCCCAATGCTGACTGTACCTCTGTGGCTtaatgtgcatcccaaatggcaccctattccctatatagtgcgcactattttagaccagagcccatagtgcCATAGGGGGctttttggtcaaaagtagtgcactaaatagggaatagggtgccatttaggaggcTAATATATTCAACGCCTTTCATTTCACATACTCTCTTTAACTTGACATGTTGCATAATAATTACAGTATTACAGAATAAATGTTCGTTATTCTTTACCTTTCTGATATCAGATGGATTACATAAAACGGGCCTGTTTCTTCATATTTACCAAAGGTGTCGTCTACAGCTTCTCTTctctctataaaaaaaaaaaaggactgATGAGTTTCTATGCTTTTATTTGATTGGACATCGCCGGCTGTTGTCGGGCAGGATAGCCGACTAGCTCCTTGTGTGTTAGCGCTTCCTGTTTGTTGGGGGGGGCCatgcttaaaggggcaatctgcagttcatacaaaaaaaacactttaCTAATAGCAGAATGAccccttttttttaaatatatttttaaattttatttttaaCTTGATGAAATGGACAACAAACCCTTTCTACTGGTGGTCTCTGTAACCGATGGTTACCTACCCGGCCCTATTGACTAATACCACAGTCTGTTGAATCGACGTGGTCGTGACCTCGTGGTCTCTGTAACCGATGGTTACCTACCCGGCCCTATTGACTACAGTCTGTTGAGTCGATGTGGTGGTGACCTCGTGACCTCGTGGTCTCTGTAACCGATGGTTACCTACCCGGCCCTATTGACTAATACCACAGTCTGTTGAATCGACGTGGTGGTGACCTCGTGACCTTGTGGTCTCTGTAACCGATGGTTACCTACCCGGCCCTATTGACTAATACCACAGTCTGTTGAATCGACGTGGTGGTGACCTCGTGACCTTGTGGTCTCTGTAACCGATGGTTACCTACCCGGCCCTATTGACTAATACCACAGTCTGTTGAATCGACGTGGTGGTGACCTCGTGACCTCGTGGTCTCTGTAACCGATGGTTACCTACCCGGCCCTATTGACTACAGTCTGTTGAGTCGATGTGGTGGTGACCTCGTGACCTCGTGACCTCGTGTCTATATCATGAACGTGATGCCTTTGCTGTTTTTAATTTGTGTAATAAATGTAGCTACATATTTACCGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129450 lncRNA upstream 15945 11311160 ~ 11312084 (+) True G113258
TU129448 lncRNA upstream 22480 11304280 ~ 11305549 (+) True G113256
TU129364 lncRNA upstream 27747 11273121 ~ 11300282 (+) True G113197
TU129362 lncRNA upstream 49850 11273121 ~ 11278179 (+) False G113197
TU129426 lncRNA upstream 67970 11259739 ~ 11260059 (+) True G113241
TU129481 lncRNA downstream 2950 11375950 ~ 11376160 (+) True G113278
TU129482 lncRNA downstream 6135 11379135 ~ 11379439 (+) True G113279
TU129486 lncRNA downstream 11098 11384098 ~ 11384386 (+) True G113281
TU129488 lncRNA downstream 17836 11390836 ~ 11391583 (+) True G113282
TU129493 lncRNA downstream 42508 11415508 ~ 11415786 (+) True G113286
XM_036937987.1 mRNA upstream 3222 11307920 ~ 11324807 (+) False LOC110520740
XM_036937977.1 mRNA upstream 3225 11307174 ~ 11324804 (+) False LOC110520740
XM_036937979.1 mRNA upstream 3225 11307931 ~ 11324804 (+) True LOC110520740
XM_036961612.1 mRNA upstream 50472 11274681 ~ 11277557 (+) True LOC118944054
XM_036937943.1 mRNA upstream 52549 11261554 ~ 11275480 (+) False elovl4a
XM_036938002.1 mRNA downstream 19942 11392942 ~ 11397308 (+) True echdc1
XM_036937994.1 mRNA downstream 29943 11402943 ~ 11413713 (+) True fbxo43
XM_036938029.1 mRNA downstream 43206 11416206 ~ 11451916 (+) False LOC110510416
XM_036938016.1 mRNA downstream 43206 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA downstream 43206 11416206 ~ 11458431 (+) False LOC110510416
TU129360 other upstream 55029 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 55132 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 84960 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 501966 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1551578 9774203 ~ 9776451 (+) True LOC118937659
TU129492 other downstream 41931 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 104976 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 335603 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1347408 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1347730 12720730 ~ 12721315 (+) True G114244

Expression Profile