RNA id: TU129444


Basic Information

Item Value
RNA id TU129444
length 932
lncRNA type sense_over
GC content 0.41
exon number 2
gene id soga3a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11328026 ~ 11373000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCTCTATACGTACCGAGACTGTTACTTCTACAACCAATCAGACGATCCAAGAGCTTCAGCTGTGGACCAACGTGGAGTTGGTTCACCGATCATCTTCAGAATGTAATCTCATCGACTAGCGGAGGAGACGTTTCATGTATTCTACTATAGCAACTCCAGGATCCCCAATGCTGACTGTACCTCTGTGGCTtaatgtgcatcccaaatggcaccctattccctatatagtgcgcactattttagaccagagcccatagtgcCATAGGGGGctttttggtcaaaagtagtgcactaaatagggaatagggtgccatttaggaggcTAATATATTCAACGCCTTTCATTTCACATACTCTCTTTAACTTGACATGTTGCATAATAATTACAGTATTACAGAATAAATGTTCGTTATTCTTTACCTTTCTGATATCAGATGGATTACATAAAACGGGCCTGTTTCTTCATATTTACCAAAGGTGTCGTCTACAGCTTCTCTTctctctataaaaaaaaaaaaggactgATGAGTTTCTATGCTTTTATTTGATTGGACATCGCCGGCTGTTGTCGGGCAGGATAGCCGACTAGCTCCTTGTGTGTTAGCGCTTCCTGTTTGTTGGGGGGGGCCatgcttaaaggggcaatctgcagttcatacaaaaaaaacactttaCTAATAGCAGAATGAccccttttttttaaatatatttttaaattttatttttaaCTTGATGAAATGGACAACAAACCCTTTCTACTGGTGGTCTCTGTAACCGATGGTTACCTACCCGGCCCTATTGACTAATACTACAGTCTGTTGAGTCGATGTGGTGGTGACCTCGTGACCTCGTGACCTCGTGTCTATATCATGAACGTGATGCCTTTGCTGTTTTTAATTTGTGTAATAAATGTAGCTACATATTTACCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129479 lncRNA upstream 3541 11361312 ~ 11368100 (+) True G113276
TU129459 lncRNA upstream 34373 11336514 ~ 11337268 (+) False G113265
TU129461 lncRNA upstream 34373 11336514 ~ 11337268 (+) False G113265
TU129463 lncRNA upstream 34373 11336514 ~ 11337268 (+) True G113265
TU129450 lncRNA upstream 59557 11311160 ~ 11312084 (+) True G113258
TU129481 lncRNA downstream 2953 11375950 ~ 11376160 (+) True G113278
TU129482 lncRNA downstream 6138 11379135 ~ 11379439 (+) True G113279
TU129486 lncRNA downstream 11101 11384098 ~ 11384386 (+) True G113281
TU129488 lncRNA downstream 17839 11390836 ~ 11391583 (+) True G113282
TU129493 lncRNA downstream 42511 11415508 ~ 11415786 (+) True G113286
XM_036937987.1 mRNA upstream 46834 11307920 ~ 11324807 (+) False LOC110520740
XM_036937977.1 mRNA upstream 46837 11307174 ~ 11324804 (+) False LOC110520740
XM_036937979.1 mRNA upstream 46837 11307931 ~ 11324804 (+) True LOC110520740
XM_036961612.1 mRNA upstream 94084 11274681 ~ 11277557 (+) True LOC118944054
XM_036937943.1 mRNA upstream 96161 11261554 ~ 11275480 (+) False elovl4a
XM_036938002.1 mRNA downstream 19945 11392942 ~ 11397308 (+) True echdc1
XM_036937994.1 mRNA downstream 29946 11402943 ~ 11413713 (+) True fbxo43
XM_036938029.1 mRNA downstream 43209 11416206 ~ 11451916 (+) False LOC110510416
XM_036938016.1 mRNA downstream 43209 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA downstream 43209 11416206 ~ 11458431 (+) False LOC110510416
TU129360 other upstream 98641 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 98744 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 128572 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 545578 10811518 ~ 10826063 (+) False G112697
TU127846 other upstream 1595190 9774203 ~ 9776451 (+) True LOC118937659
TU129492 other downstream 41934 11414931 ~ 11415178 (+) True G113285
TU129561 other downstream 104979 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 335606 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1347411 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1347733 12720730 ~ 12721315 (+) True G114244

Expression Profile