RNA id: XM_036938025.1


Basic Information

Item Value
RNA id XM_036938025.1
length 4059
RNA type mRNA
GC content 0.56
exon number 22
gene id LOC110510416
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11416206 ~ 11459325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACGGTCTGGTGACGGCGGGTCAGAGGTGTTCAGGGTTTAGGTATAGAGCCCCCTGGCTGCCGTTTCTGGGTGAATTATAACTAAGGACAACTGAAGTACATAAAAGTGAAGAATGTTGGGGAAGATTACAACAGATCCACCTTACCTTACCATCGATAATTTTGAGGACTGTCTGgcttctgatgatgttctggtgcACTTCTTTAACGACTTCCTCAGTCTACCTTCGTTCCCTGAGTGTGTACAGTACAACCAGGCGACTGGTGTGTTTGAGGTGGTCAGTGATGCAGCGGAGGCTCTGTCTAGGAGGATCAGGTCAGCCCTGCAGTACTTTAAATCACAACCTCTCACGGACCCAACAGAGCTGACTGCTAGACCTGTGGTGGACAACCGCTACACTGTTCTGTGCTTGGACAGAGAACAGGGAGTGGAGTGGATCCTAAAAGAAAGACTACCCTTGTTTATTGAAAGTGACTGCTACTTCGAGTACAGGTTAGCGAAGCTGCTCTCTCAGTGGGGCCCTCAGGGCTGGAACCAGAAGAGGGATGGTACCTCAGTCCAGCCCCCTGTCACCACAGAGCCTGTCTGTCCTTCCCCTGGGCCCGATGACAGAGAGACCCTGATGAAGGTCCTCTATGTGTCACTGGGACAGgcCTCGGTAACAGACATGTTGACAATGGCTAAGGACAAGGACAAGCGGCTGCCTGTCTGTACCCGGTCTGTGAGAACCCCGGTGTGCTCCCTGGGCCGGGAGGGACAGAGGGGTCCGGCCTCAGCCTGCTTCTCCTGCATCCCTGACTCAGAGTCCTACGCCCTGTCCTCCTCACTCCTCGTCTCCTTTCCTGTCTCCTCTTCGCTCCcggactgtcctctctgctcttcACTTCTAGACTGGGACAAGAGACGGGGAGACCACAGCGCAGAGCAGGAGATGAAAGTCTAcctcacagagacagaggcaaagacagagagagaggcaggaactACAGATGAGGATAATGGGGAACCCAAGCCCCAGAGTCCCGCCTGTTCTACCACTGATGAGGAGACGGGTGGTCCCCACACAGAGAGCCCCTGTGAGGGAGGTTCAGCCACCAGCCACAGCAGACTgaaggagcagcaggaggagggtgAAGGGTCAGAGGAGGAGAATGACCATGACCTTGAGTTCTATGATGTCACTGCTAGTATCCATAGTGATAGACAGGGCCTTGGTGACTTTAAGGACTTCTTAAAGGGAACACTAGGAGAGAAGCTTTTGCGTCTGTGGATGGATATAGAGAGACTGAAGACCCTACAGGACGACAGGAGGAGAATCAGGCATTTGGTCCAGATGCGTAGCTGCTACCTGCTGACCGGTGGCCAGAGCAGTCTGAATGGTGAGCTGTTAACCAGACTgggtctctctacctccccctgctggagagaggacagactgCAGAGAGTTCAGCCCCGTGTCACTGAGGCACTGCTCTGCTactggggtccCAGGTTCAGGATGAGCCAGAGAGCAGTAGATCCTCTCAGACTGTCGCTGTGGAGGAACAGACAGCTACACCCTCCCTCTGGTGTGAACCCTAACCCTCGTTACATCAACCTCCACCCCCACCGGCCTCACACCTCTATACCCCGACCTACCATCCGCCCAGACACCTCTCTACCCAGAGACAGGACCCCCACACCAGCTCACACACAGACAGGTTATGCCAGCAGCAGTCCTGTTGTAGGGGcctggaggatggagaggatgttACAGGCTCTATGTGTGGACTCACAGGCCGGGTTCTACTTCACACGCTACTGTGAACGCTCTGGAAACCCGCTGTGGGAGAATGCCGTCCACTGCTGGTGTGATCTGCAGCAGTACCACCAGCTCTTCTACCAAGATGGACTGGATCCCTACAGGGTACAGAGACAGGCTCATTTGCTGTATTCAACCTACGTGTGCAGTGCTGCCCGTAGTAGcattgaggtggaggaggagagcagagagagggtgtACACCTGTCTCACTCCCCCGTTTGAGGAGCTGTTTGACTGGGTGGAGGAACACACTCTGACCCTCCTCCTGGAGCCCTGGACGCTGCTCACCACCAGGGACACAGACACCTTCCAGAAGGTGGCTGTACGGGAGGAGACTCGCCAGGTGGAGTCAGAGCCGTACGGAGAACTGAAGACGCTGTACGAGGAGGCTGGACACAGACTGGAACAGCATGCTGTGGCCCAGGCCTGCAggccccctcctccaccactagaGGTCGCCAGGTCTCCAGCTATGTGGTCTGCCGTCCCAGAGAGGTACAGAGGGTACAGGTTGGGCTCTCTGCTAGGACACCGCACGGAGCTACAACACTTCACATACTTCCTACAGGACAACACCGCCAGtatacACCTGGCTTGCTGGCAGGACATAGAGAATTACAGGAGAATCCCCCATAAAGACAAGGCCCAGAGAGAGGACAAGTCCAGACTCATTAAGGACAAATACCTCAATAGGAAATACTTCTTTGGGCCTGACAGTCCTGCCACCAGACAACAACAGGAGGAGGTGATGCGTCTGGCTGGTGGCTGGGGGAGACTGCTCCATGACCGTCTGTGTGCTCCTGTCCTGGTGGACATTCAGAGCATCACCAGGAACCACATAGAAACAAGATGGCTGCCTGTCTTCCTGACGACGCCGGAGTTCAATGAGAGACAGCAGCAGAGAGTCAGGCCTCGGGGTGAAGACGGGGTGTCGGACCAGGTCTACCAGCGACACAGGAACAAGAGAGAGCAGGTCAAGGGGACGTGGATGACCTCTGCAGGGGAGATCCTGGCAGTCCGGAGGGCCCTGCTCAACCCCGTCACGTGTCATCAGTTCCGGCGCTTCGTCTCGCTGAAAGGAGACTTCCTGGAGAATGACGTCCTGTTCTGGCTGGAGGTCCAGAGGTATAAGGATCTGTGTCATTCCCACTGTGTGGAGGCTGTAGTCCAGGACAAGGTGTCCACCATCATCAGCTGTTTCATCCAGTCCTCCGTCCCCCCAGCCCTGCAGATAGACATCCCCCAAGAGCAGGCAACACACAtcctggagaggaggggggagatgggGCCCTACGTCTTCAGAGAGTCTcagATGTGTGTGTTCAGTGAGCTACTGAAGCTGTGGCCAGAGTTCCTGTCGTTCAGCAGCGGTgtgcaggaggaggaggtgttgccGCTGTTGCAGAACAGCGTGAACAAACAGAGTGCTAAACTGCAGCGTCTCAGGAGGcgagaggaggaaaaggaagtggagaggagagcccaggaggaagtggagaggtTTCCAGAGGAGCATGAGGAGAAACACAAAGGACTACAGGAGAGTAGAGAGCTGCTTTACCCTAGTCAACAGCTGTCTTGGTCCTACTCTAAATACATGGTcgccctggagagagaggaggtgctgcTGAGGAGACAGGAACTCCCCTCCTCCACTGGGACAGACTCGTCCTCTGCCCACAGTCGGAAGTCAAAGGGCAGCAGACACTCCCGACAGAGCCAACACCAGACCCAGCAGAGTTCTAACGTCTCCCCCAGGACAGAGCCAACACCAGACCCAGCAGAGCTCTAACGTCTCCCCCAGGACAGAGCCAACACCAGACCCAGCAGAGCTCTATCGTCTCCCCCAGGACAGAGCCAACACCAGACCCAGCAGAGCTCTATCGTCTCCTCCAGGACAGAGCCAACACCAGGCCCAGCAGAGCTCTATCGTCTCCCCCAGGTCAGAGCCAACACCAGGCCAAGCAGAGTTCTATTGTTTCCCCCAGGACAGAGTCAACACCAGACCCAGCAGAGGCCAGAGCCAACACCAGGCCCAGCAGAGTTCTATCGTTTCCCCCAGGACAGAGCCAACAACAGGCCCGCAGAACTCTATCGGCCCCCCCGGCCAACACCAGGCCCAGCAGAACTCTAATGTCTCCCCCAGGACAGAGCCAACACCAGGCCCAGCAGAGCTCTATCGGCTCCCCCAGGACAGAGCCTACACCAGGCCCAACAGAGCTCTAACGTCTCCCCCAGCCAACACCAGGCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129493 lncRNA upstream 420 11415508 ~ 11415786 (+) True G113286
TU129488 lncRNA upstream 24623 11390836 ~ 11391583 (+) True G113282
TU129486 lncRNA upstream 31820 11384098 ~ 11384386 (+) True G113281
TU129482 lncRNA upstream 36767 11379135 ~ 11379439 (+) True G113279
TU129481 lncRNA upstream 40046 11375950 ~ 11376160 (+) True G113278
TU129549 lncRNA downstream 11357 11469788 ~ 11472311 (+) False G113311
TU129551 lncRNA downstream 11357 11469788 ~ 11472311 (+) False G113311
TU129552 lncRNA downstream 11357 11469788 ~ 11524208 (+) False G113311
TU129553 lncRNA downstream 11357 11469788 ~ 11472311 (+) False G113311
TU129554 lncRNA downstream 11357 11469788 ~ 11472311 (+) False G113311
XM_036937994.1 mRNA upstream 2493 11402943 ~ 11413713 (+) True fbxo43
XM_036938002.1 mRNA upstream 18898 11392942 ~ 11397308 (+) True echdc1
XM_036937970.1 mRNA upstream 43206 11328026 ~ 11373000 (+) False soga3a
XR_005035111.1 mRNA downstream 841108 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 1013809 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 1103906 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 1103912 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 1103926 12562357 ~ 12616197 (+) False LOC110513835
TU129492 other upstream 1028 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 143206 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 143309 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 173137 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 590143 10811518 ~ 10826063 (+) False G112697
TU129561 other downstream 19545 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 250172 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1261977 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1262299 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1303801 12762232 ~ 12762827 (+) True G114263

Expression Profile