RNA id: TU129495


Basic Information

Item Value
RNA id TU129495
length 1639
lncRNA type sense_over
GC content 0.42
exon number 5
gene id LOC110510416
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11416206 ~ 11459325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaggaggtgttgccGCTGTTGCAGAACAGCGTGAACAAACAGAGTGCTAAACTGCAGCGTCTCAGGAGGcgagaggaggaaaaggaagtggagaggagagcccaggaggaagtggagaggtTTCCAGAGGAGCATGAGGAGAAACACAAAGGACTACAGGAGAGTAGAGAGCTGCTTTACCCTAGTCAACAGCTGTCTTGGTCCTACTCTAAATACATGGTcgccctggagagagaggaggtgctgcTGAGGAGACAGGAACTCCCCTCCTCCACTGGGACAGACTCGTCCTCTGCCCACAGTCGGAAGTCAAAGGGCAGCAGACACTCCCGACAGAGCCAACACCAGACCCAGCAGAGTTCTAACGTCTCCCCCAGGACAGAGCCAACACCAGACCCAGCAGAGCTCTAACGTCTCCCCCAGGACAGAGCCAACACCAGACCCAGCAGAGCTCTATCGTCTCCCCCAGGACAGAGCCAACACCAGACCCAGCAGAGCTCTATCGTCTCCTCCAGGACAGAGCCAACACCAGGCCCAGCAGAGCTCTATCGTCTCCCCCAGGTCAGAGCCAACACCAGGCCAAGCAGAGTTCTATTGTTTCCCCCAGGACAGAGTCAACACCAGACCCAGCAGAGGCCAGAGCCAACACCAGGCCCAGCAGAGTTCTATCGTTTCCCCCAGGACAGAGCCAACAACAGGCCCAGCAGAGCTCTATCGGCTCCCCCAGGACAGAGCCTACACCAGGCCCAACAGAGCTCTAACGTCTCCCCCAGCCAACACCAGGCCCAACAGAGCTCTAACGTCTCCCCCAGCCAACACCAGGCCCAGCAGAGCTCTAACGTCTCCCCCAGGACAGAGCCAACACCAGGCCCAACAGAGCTCTAACGTCTCCCCCAGCCAACACCAGGCCCAGCAGAGCTCTATCGTCTCCCCAAGCCAACATCAGGCCCAGCAGAGCTCTATCGTCTCCCCAAGCCAACACCAGGCCCAGCAGAGCTCTATCGTCTCCCCAAGCCAACATCAGGCCCAGCAGAGCTCTATCGTCTCCCCCAGGACAGAGCCAACACCAGGCCCAGCAGAGCTCCAACGTCTCCCCCAGGACAGACAATGGGCTTGTTTGAGTGGTAAGCCTGAAGCAAACCGTCTGCAGACGATCGTGGAGAAATGAATTCTGGGAAGGTGCATCTGTTTCAGCGTTAAGTCTGATACTCACGTGACTTTCCAACATGGCAGTTGGAATGTTGACATTTTTCAGAAAAGTTGATTGTTTGTAGAAATAAATGTCTCTATCCCCATATCACTGTAAATGTGTGTAGCCTACATTTGTACTGGGAAGAGAGAgactcaaatatcacatttggggcggcagggtagcctagtggttagagcgttgggctagtaaccggaaggttgcaagttcaaatcccccgagctgacaaggtacaaatctgtcgttctgcccctgaacatgacagttaacccactgttcctagaccagttaactgtctactaacccactgttcctaggatggcattgaaaataagaatttgttctttaactgacttgccaagttaaataaaggttaaataaaatgtaacttGTACATATCCACTGTATAAATGAATTGCTGCAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129539 lncRNA upstream 2979 11447602 ~ 11448392 (+) False G113305
TU129540 lncRNA upstream 2979 11447602 ~ 11448392 (+) True G113305
TU129516 lncRNA upstream 28416 11422163 ~ 11422955 (+) True G113292
TU129493 lncRNA upstream 35585 11415508 ~ 11415786 (+) True G113286
TU129488 lncRNA upstream 59788 11390836 ~ 11391583 (+) True G113282
TU129549 lncRNA downstream 10463 11469788 ~ 11472311 (+) False G113311
TU129551 lncRNA downstream 10463 11469788 ~ 11472311 (+) False G113311
TU129552 lncRNA downstream 10463 11469788 ~ 11524208 (+) False G113311
TU129553 lncRNA downstream 10463 11469788 ~ 11472311 (+) False G113311
TU129554 lncRNA downstream 10463 11469788 ~ 11472311 (+) False G113311
XM_036937994.1 mRNA upstream 37658 11402943 ~ 11413713 (+) True fbxo43
XM_036938002.1 mRNA upstream 54063 11392942 ~ 11397308 (+) True echdc1
XM_036937970.1 mRNA upstream 78371 11328026 ~ 11373000 (+) False soga3a
XR_005035111.1 mRNA downstream 840214 12299539 ~ 12299957 (+) False LOC110511179
XR_005039499.1 mRNA downstream 1012915 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 1103012 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 1103018 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 1103032 12562357 ~ 12616197 (+) False LOC110513835
TU129492 other upstream 36193 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 178371 11261554 ~ 11273000 (+) False elovl4a
TU129361 other upstream 178474 11261554 ~ 11272897 (+) True elovl4a
TU129356 other upstream 208302 11240732 ~ 11243069 (+) False fbxo32
TU128663 other upstream 625308 10811518 ~ 10826063 (+) False G112697
TU129561 other downstream 18651 11477976 ~ 11482741 (+) True G113313
TU129672 other downstream 249278 11708603 ~ 11709777 (+) True G113396
TU131040 other downstream 1261083 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 1261405 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 1302907 12762232 ~ 12762827 (+) True G114263

Expression Profile