RNA id: XR_005035100.1


Basic Information

Item Value
RNA id XR_005035100.1
length 3107
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC118937706
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12085564 ~ 12089429 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagaggacagagagatgtggatagaccaggtagaggacagagagaccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatagaccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTaattagaacagaacagagccatGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTaattagaacagaacagagccatGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGACCAGGTAGAGGACAGATAGATGTGGATAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTaattagaacagaacagagccatGAATCAGGTTCAGAGAGATGTGGATAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGACCAGTTAGAGGACATAGAGATGTGGATAGACCaggtagagaacagagagatgtggatagaccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCTGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCTGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatagaccaggtagaggacagagagaccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCTGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCTGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCTGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatagaccaggtagaggacagagagaccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCAGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCTGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCTGAGAGATGTGGATAGAccaggtagaggacagagagatgtggatagaccaggtagaggacagagagaccaggtagaggacagagagatgtggatAGACCAGGTAGAGGAGCAGTCCATCTAGTcagtggaacagaacagagcCATGAATCAGGTTCTGAGACGTTGGAAGAAACGACAGAAAATATGTTCTCATCAAAATAAGAAGGGAAGGTAAGAATTGGGCGTTGAAATAACTGTGTATTAAAATCTATGTTACGATGGGAAGTGATGTCATTTTACAGTCCTCAGTTAGCACTGTAGTGCAGGAGGTTGAGTTCTGATCACGATGTGTCTGTATAACATCATATTTTGTGTGGCCCAGTCTATAAAGTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130632 lncRNA downstream 4277 12080864 ~ 12081287 (-) True G114017
TU130500 lncRNA downstream 19303 12065836 ~ 12066261 (-) False G113937
TU130501 lncRNA downstream 19303 12065836 ~ 12066261 (-) True G113937
TU130613 lncRNA downstream 30632 12054220 ~ 12054932 (-) True G114002
TU130611 lncRNA downstream 32816 12051624 ~ 12052748 (-) True G114000
TU130652 lncRNA upstream 18700 12107696 ~ 12112517 (-) False G114027
TU130654 lncRNA upstream 19208 12108204 ~ 12108551 (-) True G114028
TU130650 lncRNA upstream 22737 12111733 ~ 12112205 (-) False G114027
TU130653 lncRNA upstream 22737 12111733 ~ 12112517 (-) True G114027
TU130658 lncRNA upstream 32321 12121317 ~ 12189176 (-) True G114030
XR_005035108.1 mRNA downstream 122970 11961554 ~ 11962594 (-) True LOC118937715
XR_005035110.1 mRNA downstream 124701 11959279 ~ 11960863 (-) True LOC118937716
XR_005035106.1 mRNA downstream 498987 11585559 ~ 11586577 (-) True LOC118937710
XR_005035107.1 mRNA downstream 500109 11584208 ~ 11585455 (-) True LOC118937712
XM_036938010.1 mRNA downstream 682702 11398092 ~ 11402862 (-) True LOC110514530
XM_036938110.1 mRNA upstream 210932 12299928 ~ 12304949 (-) False osr2
XM_036938107.1 mRNA upstream 210932 12299928 ~ 12304950 (-) True osr2
XM_036961628.1 mRNA upstream 346473 12435469 ~ 12445157 (-) True LOC118944056
XR_005035115.1 mRNA upstream 460303 12549299 ~ 12553519 (-) False LOC118937718
XM_036938124.1 mRNA upstream 460304 12549300 ~ 12553519 (-) True LOC118937718
TU130213 other downstream 426896 11626535 ~ 11658668 (-) True LOC110513475
TU130157 other downstream 732823 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 732823 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 759952 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 772906 11310843 ~ 11312658 (-) True G113712
TU131242 other upstream 495031 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 521673 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 618831 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 646318 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 1003096 13092092 ~ 13093765 (-) True LOC110507534

Expression Profile