RNA id: TU129981


Basic Information

Item Value
RNA id TU129981
length 902
lncRNA type read_through
GC content 0.47
exon number 2
gene id LOC110511179
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12299517 ~ 12300453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggAATATTTAACTTGCTTTATTTCTAAAATACAATTTAACATACTTTAAACATtagggttgttgttttttttaaacaacgtTTTAAttcaaggacaacaacaacaaaaaatacaaaaaaaatacatgatTTACATGGGCTCCAAAAGTCTTGATATTTACAGGTAGAAGAGGCAGGAAGAACGGTCTGTCTCTACAGGTAGAAGAGGCAGGAAGAGCGGTCTGTCTCTACAGGTAGAAGAGGCAGGAAGAGCGGACTGTCTCTACAGGTAGAAGAGGCAGGAAAagcggtctgtctctgtctgggctcCTTGGCTTTCACTTGACGCGCTGTACTGCTCATCACTCCGTTGTAACATTGCTTGTCCACGGTTCAGTTTGTTATATTCTTTCAATGGAAGAAAAATAAAACGTTTCGTcgatgttgttgtctcctctgtTAATAACGtccgttttgtttgtttgtctgtttgttttggctGTTCATCAGCCTTCTCAGATTGGCTAGTAGTCCTGATGAGGAGTGTGCGTCAAACTGTGCCGTCGCAAGTCACAGTTGCGCCGAAACACCTTTCCGCAGCGGTCACAGCTGTAGGGCTTGATGTCTGTATGGGTGAGAAGGTGAGTTTTCAGGTTACTTCTTTGATTAAAGGTTCTTCCGCATGTGGGGCATTTGTGTGGAGATTCCTGTTTAGATTTAAAGCAAGCAAAGGATTATTCCCTTTAGTTTATTTAGCTAAatatatgtattgtattataataTGAATCTTCAATCAGTTATTGACATTGTGCTGAAAGTAAGCTGTGCCCTGACAAAATGAACGGCTGTAGGTCTAGCCTATATTTCTTTAAACTGCTTATCGTAATCATTCAGTTATTGCCATACATGCCAAATATAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129963 lncRNA upstream 24755 12274294 ~ 12274762 (+) True G113619
TU129929 lncRNA upstream 95329 12203682 ~ 12204188 (+) True G113593
TU129925 lncRNA upstream 105713 12193059 ~ 12193804 (+) True G113589
TU129917 lncRNA upstream 106402 12191633 ~ 12193115 (+) False G113589
TU129916 lncRNA upstream 109058 12190113 ~ 12190459 (+) False G113589
TU129986 lncRNA downstream 756 12301209 ~ 12307847 (+) True G113634
TU130002 lncRNA downstream 12355 12312808 ~ 12314280 (+) True G113644
TU130775 lncRNA downstream 37424 12337877 ~ 12338131 (+) True G114105
TU130798 lncRNA downstream 57412 12357865 ~ 12358192 (+) True G114125
TU130808 lncRNA downstream 82357 12382810 ~ 12385066 (+) True G114135
XM_036938016.1 mRNA upstream 841086 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 841086 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 841086 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 847601 11416206 ~ 11451916 (+) False LOC110510416
XM_036937994.1 mRNA upstream 885804 11402943 ~ 11413713 (+) True fbxo43
XR_005039499.1 mRNA downstream 171787 12472240 ~ 12472430 (+) False LOC118944185
XM_036938134.1 mRNA downstream 261884 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 261890 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 261904 12562357 ~ 12616197 (+) False LOC110513835
XM_036938135.1 mRNA downstream 262469 12562922 ~ 12616197 (+) False LOC110513835
TU129672 other upstream 589740 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 816776 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 884339 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1026517 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 419955 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 420277 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 461779 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 648907 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 1321524 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU93279 True 941 lncRNA 0.40 1 NC_053118.1 728521 ~ 729461 (+)