RNA id: XM_036938107.1


Basic Information

Item Value
RNA id XM_036938107.1
length 1515
RNA type mRNA
GC content 0.51
exon number 4
gene id osr2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12299928 ~ 12304950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGCGGGCTGAGCACGCCGAGTGCCCCGAGTCCTGAAAAGTGAAGGGACTTGTGCTCTTCAAGCCCACTACAGCCCAACTCCGAACCGAGCAGAAACAGAGCAGAGTACGGGTCTCCTGCGCTTGGCGTCGCTTGAACTCTATATAGTGAtcgtaacttttttttttacccctcccGAGGACTTCTTTGCCCCACTGTGCGCAAAGTATTACGAGTCGCAAGAGATCTGGTTCTGCGACGGTATGGCGATGAGACTTACATGGTCGAAGTTGGAAAACTTTAGCTAACTTTAAAGTGGAGTTTTTGTCGCCTCTCTTATTAAAGACATTGTGGATTATTGGAACACAGCAGAACTAACTGCGGAGTGACCTTTGGCGTCTGTTTATTGGGGGACCTTCAACGTGGTAGAGTTGTGCCGAGGCCTTAACCGTGAAGCCTTTCGCCGCCGAGATGGGGAGCAAAGCCCTGCCCGCTCCGATCCCTCTCCACCCGTCTCTCCAGCTCACCAACTACTCCTTCCTGCATGCGGTCAACGCATTCCCGGCCGCGGTCGAACAGCTCCAGGGACTGTACGGCCTTAGCGCGGTGCAGACCATGCACATGAACCACTGGACACTAGGCTATCCGCACATGCAGGGACTGAGGTCGACTATCACAGAGATGGCTGCCGCTCAGGGCTTAATGGATCCCCGGTTTACCTTCACGGGGCTACCGTTCGCCGCACACCTCTTCCACCCCAAACAGGGCATTACTCACTTTATCCCCGGGCTGCACAAGGACCGACCACCGCGCTTTGACTTTGCCAACCTGGCGATAGCTGCCACCCAGGAGGACCCGCCGAAGGCTGGGGATCTTTCAAAGTTGACAGCGGGGCTCGGAAGCGCGATATCTGAGTTCAACAAACTGTCGCCTGATAGAAAACCCACCCGGGGAAGGCTTCCGTCAAAAACGAAAAAGGAATTTATTTGCAAGTTCTGTGGCAGGCATTTCACCAAGTCATACAATCTTCTGATCCACGAGAGGACTCACACAGACGAGCGGCCTTATACCTGTGACATCTGCCACAAGGCCTTCCGAAGACAAGACCACCTGAGAGACCACAGATACATCCACTCCAAGGAAAAGCCTTTCAAATGTCAAGAGTGTGGGAAAGGATTTTGTCAGTCTCGAACTTTAGCCGTTCATAAAACATTACATATGCAGGAATCTCCACACAAATGCCCCACATGCGGAAGAACCTTTAATCAAAGAAGTAACCTGAAAACTCACCTTCTCACCCATACAGACATCAAGCCCTACAGCTGTGACCGCTGCGGAAAGGTGTTTCGGCGCAACTGTGACTTGCGACGGCACAGTTTGACGCACACTCCTCATCAGGACTACTAGCCAATCTGAGAAGGCTGATGAACagccaaaacaaacagacaaacaaacaaaacggaCGTTATTAacagaggagacaacaacatcgACGAAACGTTTTATTTTTCTTCCATTGAAAGAATATAACAAAC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09215 OSR, ODD; odd-skipped

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130723 lncRNA downstream 25499 12271706 ~ 12274429 (-) True G114075
TU130726 lncRNA downstream 30107 12265543 ~ 12269821 (-) True G114077
TU130721 lncRNA downstream 32307 12263854 ~ 12267621 (-) False G114074
TU130774 lncRNA upstream 17569 12322519 ~ 12322725 (-) True G114104
TU130778 lncRNA upstream 37017 12341967 ~ 12342171 (-) True G114108
TU131167 lncRNA upstream 77140 12382090 ~ 12384153 (-) False G114340
TU131170 lncRNA upstream 77298 12382248 ~ 12384153 (-) False G114340
TU131169 lncRNA upstream 78194 12383144 ~ 12384153 (-) True G114340
XM_036938036.1 mRNA downstream 9218 11471939 ~ 12290710 (-) False LOC110513475
XM_036938048.1 mRNA downstream 9218 11471939 ~ 12290710 (-) False LOC110513475
XM_036938060.1 mRNA downstream 9218 11545090 ~ 12290710 (-) False LOC110513475
XM_036938054.1 mRNA downstream 9218 11545786 ~ 12290710 (-) False LOC110513475
XM_036938043.1 mRNA downstream 9222 11471939 ~ 12290706 (-) False LOC110513475
XM_036961628.1 mRNA upstream 130519 12435469 ~ 12445157 (-) True LOC118944056
XR_005035115.1 mRNA upstream 244349 12549299 ~ 12553519 (-) False LOC118937718
XM_036938124.1 mRNA upstream 244350 12549300 ~ 12553519 (-) True LOC118937718
XR_005039515.1 mRNA upstream 312556 12617506 ~ 12617694 (-) True LOC118944197
XM_036938156.1 mRNA upstream 334752 12639702 ~ 12673826 (-) False pop1
TU130213 other downstream 641260 11626535 ~ 11658668 (-) True LOC110513475
TU130157 other downstream 947187 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 947187 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 974316 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 987270 11310843 ~ 11312658 (-) True G113712
TU131242 other upstream 279077 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 305719 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 402877 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 430364 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 787142 13092092 ~ 13093765 (-) True LOC110507534

Expression Profile