RNA id: XR_005039499.1


Basic Information

Item Value
RNA id XR_005039499.1
length 191
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC118944185
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12430935 ~ 12555437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcgcttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcccctaTCTGGGGACcatatattaaattgatttttgGAATAGGGAGATGGAataggggcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggAACGGTGCACCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130828 lncRNA upstream 57315 12412044 ~ 12414925 (+) True G114144
TU130819 lncRNA upstream 63320 12407008 ~ 12408920 (+) True G114140
TU130808 lncRNA upstream 87174 12382810 ~ 12385066 (+) True G114135
TU130798 lncRNA upstream 114048 12357865 ~ 12358192 (+) True G114125
TU130775 lncRNA upstream 134109 12337877 ~ 12338131 (+) True G114105
TU130866 lncRNA downstream 1942 12474372 ~ 12475714 (+) True G114161
TU130876 lncRNA downstream 58422 12530852 ~ 12535346 (+) True G114167
TU130916 lncRNA downstream 130456 12602886 ~ 12603535 (+) True G114191
TU130827 lncRNA downstream 142778 12615208 ~ 12615343 (+) True LOC110513835
TU130917 lncRNA downstream 146175 12618605 ~ 12619236 (+) True G114192
XR_005035111.1 mRNA upstream 172283 12299539 ~ 12299957 (+) False LOC110511179
XM_036938016.1 mRNA upstream 1013809 11416206 ~ 11458431 (+) False LOC110510416
XM_036938019.1 mRNA upstream 1013809 11416206 ~ 11458431 (+) False LOC110510416
XM_036938025.1 mRNA upstream 1013809 11416206 ~ 11458431 (+) False LOC110510416
XM_036938029.1 mRNA upstream 1020324 11416206 ~ 11451916 (+) False LOC110510416
XM_036938134.1 mRNA downstream 89907 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA downstream 89913 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA downstream 89927 12562357 ~ 12616197 (+) False LOC110513835
XM_036938135.1 mRNA downstream 90492 12562922 ~ 12616197 (+) False LOC110513835
XM_036938142.1 mRNA downstream 90492 12562922 ~ 12616197 (+) False LOC110513835
TU129672 other upstream 762463 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 989499 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1057062 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1199240 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 247978 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 248300 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 289802 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 476930 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 1149547 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile