RNA id: XR_005035115.1


Basic Information

Item Value
RNA id XR_005035115.1
length 3685
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC118937718
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12549299 ~ 12553519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAACAGTAATCCATCATTCAGACACACTGAAATTCTAACCAGTCAGAGTACATGATATCTAAtcattcaattgatttgacaacGGATTAGTTGAAAAACAAACCCACGTTTTCTGCCTCACGAATCAATCCTAACCTTTACACGTCTCATCCGTCTTCACTAACGGCTCAGCTGGAGAGCTCTCAGCCGGTTAACGGTGAACGGTTACCTCATTTGAAGATGACGGCCTCTGTATAACGCTCGGGCGCACACGCTTTTAATGATTCGTGACTTCTCCTCCCTCGCGGAGAGCAGAGTAAAGGAGTCGGTCCTTTCTGCACCTTTCTCCGAGAAGAGGGAGGTGTTGAATTCGCTCGGGAAGGCGAGGGCGGAACGGTAGTTTACAGAAAGTGGTTGCTACTGCACGGCAACAGAGCTGAGGTCTAACCGCTACTAGACGTCACAATGGAGATTCATCCGAGGAATTCCCTCACTACGGAAACGGAAGCATCTGGAGTGTGTTAGTTACAACGGGAGATTAAGATGTGGCGCGAGCGCTCACGATTTAACGATGTAAATAGTCTATGGGGGAGTCTGTCTGTGGGGCGGACACGTTTTATgtctggagaagagagagacaacctTGTTCCGCGCTGACGGCTCCGTTgaaacccctctctctatctaaccTGGGCAGTAACGCATGAccgactgacagacagacagacagacagacagcattggTTCAGTCTTCCACGCTAGCTGGAGGAGGCACAGAGAGGAGGCACAGAGAGGAGGCATCTATCTACGTCTATCCAAGTTGCTCAGCAGCTCGGTGAAGCACAATGCCCTCGTAGGAGCTGATATGCAGAAGCGTTGTGTAGGAGACTCGGGAAAAGGGCGTTGAATAAAgTACTTCTCCACTCCCCAGTCCGTTCACCCCTCGCCAGACATGACTGGTCAGAGCCTGGAGGAGCTGACAGCAGCCTATGAGGATCACACCGTGCGCATCAATGTGGGAGGGTTCAAGAAGAGGCTGTTCTCCAACACTCTGTCTCGCTTCCCGGAGACCCGTCTGGCTCGTCTGCTACAGTGCCAATCAAAAGAGTCGATACTAGAACTCTGCGACGACTACGACGACGCGGAAAAGGAGTTTTATTTCGACAGGAACCCGGCTCTCTTCCCTTACGTGTTGAATTTCTACAACACCGGGAAGCTGCACGTCATGGCAGAGTTGTGCATCTTCTCCTTCAGCCAGGAGATCGAGTACTGGGGCATCAATGAATTCTTCATCGACTCGTGTTGCAGCGGCGCCTACCACTGCCGAAAGATGGATCCTAACCGCGGGGAGGACTGGGACGACTGCCGGAGCGACGAGGGCAGCACCACGTCATCGTTCGACGAGATTCTAGAGTTCTATAACGACGCCACTAAGTTCGATAAGCAGCCGTTGGGGAGCGTCCGCAGGCGGATCTGGTTGATCCTGGATAACCCGGGGTACTCCGTCGCCAGCCGAGTCATCAGTATCCTCTCTATCCTGGTCGTGTTGGGTTCCATAACCACCATGTGCATGAACAGCATGGCTGAGTTCACCCTGGTGGACAGGGAGGGGACGCCTCACGAGGACCCCAGGTTTGAAACGGTGGAACACTTTGGTATCGGCTGGTTCACCTTGGAGCTGGTGGCCCGGTTCACAGTCGCTCCAGATCTTATCCATTTCTTCAAGCATCCGTTGAACTTAATAGACCTCGTGTCGATATTACCGTTCTACCTGACGCTCTTCATCGACCTGGTGGCCGAGAGCAGCCCGGCGCTGGCCAATCTGGGGCGCGTGGCACAGGTGCTACGGCTGATGAGGATCTTCCGTATCCTGAAGCTGGCGCGTCACTCCACGGGGCTGCGCTCTCTGGGCGCCACGCTGAGAAACAGCTACAAGGAGGTGGGGTTGCTCCTGCTCTACCTGGCGGTGGGCGTGTCTTTCTTCTCTGTCATGGCCTACACCGTGGAGAAGGACAGCGAGGACTTCTCTACCGTCCCAGCATGCTGGTGGTGGGCCACGGTGAGCATGACCACGGTGGGGTACGGAGACGTGGTCCCGGTATCTATAGCCGGCAAGATGACGGCCTCGGCCTGTATCCTGGCAGGCATCCTGGTGGTTGTGCTTCCCATCACCCTCATATTCAACAAGTTCTCTCTCTTCTACAAGAGACAGAAACAGTTAGAGATCGCTATGCGCAGCTGTGACTTCGACCAGGAGATCAAAGAGAACCTTCCCTCTGTCAATCTGAGGAACTACTATGCACACAAGGTGAAATCTCTCATGGCCAGTCTGTCCAATATCAACCGGAGCCTGCCCAGTGAACACAGTCTGAACGAGATGTCAATACATTAAGATCTGTGGATCAACAGACTGCCCCCCCACCCCGCTGGCCTTATAAGGAAGGACGTGAccgaaggagaggagaaacatgGTGGAAGAGGTAGTGCTGTTTCTGTGTAGCCCTTGTTGTTGAATAGAGCTACATGGGAAGCTGAAGTTTAGTTTGACTGACAGGCGAGGGCGTGGGCGGGCCAACCAACATCACAACCTTTCTATTGGGAGAATCACAtcgaatcctctctctcttttacattcTTCTCAAatcccattggatgagaaagccagaggtccttCCCCTCTGACCTTTCTAATCCAATGGGTTTTTTGAGAAGGCTTTTCGAGGAGAGAGGACACAAGATATCAAAGAAAAACAATGGAGATTCTCCCAATGATTCCTCTTCCACCTTTTCATTCACCTCAAGTGTTTTAACAGTGTGGTTCACCACTCGGGGTCAGCCCTAGGACCTGGGGTTCATCACTAGTCACGAGGGGTCAACCCTAGGACATGGGGTTCATCACTAGTCACGAGGGGTCAACCCTAGGACATGGGGTTCATCACTAGGGGTCAACCCTAGGACATGGACTTCATCACTAGTCACTAGGGGTCAACCCTAGGACATGGACTTCATCACTAGGGGTCAACCCTAGGACATGGGGTTCATCACTAGGGGTCAACCCTAGGACATGGACTTCATCACTAGGGGTCAACCCTAGGACATGGGGCTTCATCACTAGGGGTCAACCCTAGGACATGGACTTCATCACTAGGGGTCAACCCTAGGACATGGGGCTTCATCACTAGGGGTCAACCCTAGGACATGGGGTTCATCACTAGGGGTCAACCCTAGGAAATGGGGTTCATCACTAGGGGTCAACCCTAGGACATGGGGTTCATCACTAGGGGTCAACCCTAGGACATGGGGCTTCATCACTAGGGGTCAACCCTAGGACATGGGGTTCATCACTAGGGGTCAACCCTAGGACATGGGGTTCATCACTAGGGGTCAACCCTAGGACATGGGGTTCATCACTAGGGGTCAACCCTAGGCCATGGgGTTCATCACTAGGGGTCAACCCTAGGTCATGGACTTCATCACTAGTCACTAAGTGTCCCCTAAAGTTTAGTCATTGTGATTTTGCCCAAAGTAGAGCTTTACTCATGTTCTCCTGTTATGAGGTACTGTTGATGTGTAACTGTTGTACTGCAATGAGATGATCAATACAAGATGTTGATACCTTCAGATGTCTAGAAACCCATATTAAAGATCAATACATATTGATACCTTCAGATACCACAtaccacaatccatgtctcaattgtttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131211 lncRNA downstream 73530 12474320 ~ 12475769 (-) True G114364
TU131201 lncRNA downstream 82899 12464565 ~ 12466400 (-) True G114362
TU131200 lncRNA downstream 85141 12462746 ~ 12464158 (-) True G114361
TU131198 lncRNA downstream 93262 12455762 ~ 12456037 (-) True G114359
TU131162 lncRNA downstream 120588 12424195 ~ 12428711 (-) True G114336
TU131241 lncRNA upstream 24340 12577859 ~ 12578364 (-) True G114389
TU131243 lncRNA upstream 34601 12588120 ~ 12589443 (-) False G114391
TU131244 lncRNA upstream 34601 12588120 ~ 12591840 (-) True G114391
TU131255 lncRNA upstream 51452 12604971 ~ 12608944 (-) True G114399
TU131257 lncRNA upstream 65002 12618521 ~ 12619052 (-) True G114401
XM_036961628.1 mRNA downstream 104142 12435469 ~ 12445157 (-) True LOC118944056
XM_036938107.1 mRNA downstream 244349 12299928 ~ 12304950 (-) True osr2
XM_036938110.1 mRNA downstream 244350 12299928 ~ 12304949 (-) False osr2
XR_005035081.1 mRNA downstream 459870 12085564 ~ 12089429 (-) False LOC118937706
XR_005035090.1 mRNA downstream 459870 12085564 ~ 12089429 (-) False LOC118937706
XR_005039515.1 mRNA upstream 63987 12617506 ~ 12617694 (-) True LOC118944197
XM_036938156.1 mRNA upstream 86183 12639702 ~ 12673826 (-) False pop1
XM_036938159.1 mRNA upstream 86183 12639702 ~ 12673874 (-) False pop1
XM_036938190.1 mRNA upstream 129539 12683058 ~ 12683775 (-) True LOC118937724
XM_036938172.1 mRNA upstream 129574 12683093 ~ 12715610 (-) False LOC118937723
TU130213 other downstream 890631 11626535 ~ 11658668 (-) True LOC110513475
TU130157 other downstream 1196558 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 1196558 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 1223687 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 1236641 11310843 ~ 11312658 (-) True G113712
TU131242 other upstream 30508 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 57150 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 154308 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 181795 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 538573 13092092 ~ 13093765 (-) True LOC110507534

Expression Profile