RNA id: XM_036938142.1


Basic Information

Item Value
RNA id XM_036938142.1
length 3449
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110513835
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12562337 ~ 12616197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCTGGGACAAACGATCCCAATTCCGAACTCTCAAAAGAAAGTTGTACAATTCTAAAAACGGTCAATAATGAATATTAACTGGGAAATGATCTTGTGAAGATTCTTGCAAATCCCTCTCTGTGACATTGAAGAATATTTCTCTCAGAACTGTGATTTCCTACAAAACATGTGTTTAGAGATTTGGACATTAACGTCGGAGTCCTAAATGAATCAGACGTATCTCCTGGGAATCATCATTTCAATATGTGGGAACTTcctcatcagcatttctctgaatATACAGAAATACGCCCACATGCGCCAGTCCCAGCTCGGCGACTCCGGGCCCTACTACACCTCAGTGCTGTGGTGGAGTGGCGTGGTTCTGATGGGACTAGGGGAGCTGGGGAACTTCGCAGCCTACGGCTTCGCCCCGGCCTCCCTCATCGCACCACTGGGCTGTGTTTCAGTCATAGCCAGTGCGGTCATCTCTGTGGTGTTCCTTAAAGAGACGCTACGAGCCTCTGATATTGTTGGTGGTGCACTAGCAGTGGTGGGAACCTATCTCCTGGTCACCTTTGCCCCCCACACCTCCACCCACATCACCGCCCACCTGGTCCAGAGATACGCTGTCAGCTGGCAGTTCCTGATTTACCTGtttctAGAGgtcatagtgttttctatcctgcTCTATTTGTACAAGAGGAGGAATATCAAGCATATAACCATAGTGATGCTGCTGGTGGCTCTGCTGGCCTCCCTGACGGTGATCTCCGTCAAAGCTGTGTCTGGGATGATCACGGAGTCCATAAAGGGAGATCTCCAGCTCACCTACCCCATCTTCTACGTCATGGTGGTGGTCATGGTGGCCTCCTGTGCCTTCCAGATAAAAGGCCTCTCTTTAACCTTCTCTGTTCTCAGGTTCCTTAATCAAGCCATGAAGGTGTTTGCTGCCACGGAGGTCGTCCCCATCAACTTTGTGTTCTTCACTGCCAGTGCCATTACCGCAGGAATAGTATTTTATCAGGAATTCCAGGGCTTGGCTTTGCTCAATATTTTAATGTTTCTCTTTGGCTGCCTGCTCTCATTCATTGGAGTCTTCCTGATAGCCAGAGACAGACCCAAGATCAAGACTGAAAACATAACCTTCATAGCCATGGGGAAAATACCAGGGAGAAAATGTAAAGACAAGGTCCAGCCGGAGGCTAAAAGCAACGCGTACGGATCTCTGGCAGCTAAACTCATGTGTAACAAACCTGGCCCACAGGACGACTCCTAATATCAgccacacctgtctgtctgtgtacagaGACTACCTGTGTCAACactacacatctctctcctggGTTGCCAGACTGACTGACTACAGGGACAAAGTGAGAGCACTGTCTCCATTAGCAAAAAATTCCCCAGATTTTCCAGAAATCCTAATATCTTCTAACTCGCTCCTGATTCCAGGAGACTTGCCAGAAGCAGGATTTCTGGGAAAAACCTGGACATCTTTGGGAAAGTTACAATTGTCAGGGAATTGAACTCAGGTGCTACAGATACTGAGGAGACGTCTCAGGATCGAACCCAAATGCACTACAGACACAAATAAAACGTAATTTAATTCTCAAGGAGGTGGCTGTCTGGAGGAACCACCTGATATTCTCTGTTAATACGAAAGCAACTGTTGGATCGAATTTCTGATGAGATGGTTTCAATCATTGATTTGTTAATAAACTGGAATGTGATATTTAAAGTGTTTCTCGAGCTCCCAAGAAACTCCTGGCTGGTAAAGGAGGTGCACCAGCGCACTCTACTGGTCGCGACAAGAATTACCATTTAAATGTGAGGTGTTTTTTAAACGTCAGACGTTCTTTGTTTTAAGCTAATAAATACGGACCAGGCTTCGGGGAGGATGGCCTCAGGACTCCACAGACATTTTAATATGACAACTACAGCTTCACCCTTTTTTCAAATCAAAACGTCGTTTTCTGTATTGCATTTTAAAGAGCAGTGGCGTAATACAGTTCAACTGACAGGTACGGCTGAGCTAACGTCTTCAACCCCTCACCTCCATTTTATGACAATGAACTTAAGCAAAGGTATATCGGTAAGAAAAACACTCGTTTTATTTTGACTTAAAAGTAAAAATGATCTGTCAATGTTAGAGAATTTATCTTGgtaatagaaaaaaataaaaacacatgaGAGTAGAAAGCCAGCtgagttttattagtcgtatgtacgggaTATATCGTCCACTGAAATGCTTACTGCAGGCTCCTACTTCACAACAACAATAATAGATACAAATAGGAGCATAACGTAAAAGTCTCGGTAGAATAGGAAACATTTTAGCATCAGTagaatacaggaaggcacaatatAATAGTCTAGTAACAGCAGGTGTGATGTAGAGAGGAATGggggtcctgtgtggctcagttggtagagcagggCACTTGCCTTGCCgtggttgtgggttcgattcccaacGGGGGACCAGTACGACGCTAAATGACTTAAATGTGAATGACACAATggacacagtgtacaaaacagacATTCCTCTTGAcggtcggggcatggactctaggTGTCGACAGCGTTCCACgaagatgctggcccatgttgactccaatgactTCCattgggaaactgttgagcggggAAAAACCCAGcaccgttgcagttcttgacacattcaaacaGGTGCTCCTGGCACCTGATAATACCCCGTATTATCTCAACAGTATTACAGAGTTCCTGTTCCTCTTCTAGAATATTATCTCAACAGTATTACAGAGTTCCTGTTCCTCTTCTAGAATATTATCTCAACAGTATTACAGAGTTCCTGTTCCTCTTCTAGAATATTATCTCAACAGTATTGGAGTTCCTGTTCCTCTTCTATAATAGTATCTCAACAGTATTACAGAGTTTCTGCATATAAACAAAGTGAGTACctctgcctccagaacagcctgaattgtTTGTGGCATGGAAATGTTTGCtgaattggtatcaagggacctaacgtgtgccaggaaaacattccccacaccattacaccaccagcctgttccgttgacaccaggcaggatgtggccatggactcatgctgcttacgccgaACCCTgtcatcagcatgacgcaacaggaaccaggATTCGTTGGAGCAGACAATGCTTTTCCACTCCTCAGTTGTCCAGTGTTGATGAtcacgtgcccactggagcctcTTCTTGTTGTTTTTATCTGAtaggaacccggtgtggtcgtctgctgcaatagcccatccgtgacaagaaCCTATGAGTTgtttgcccattctaatgttcattcaaacagtaactgaatgccttgatgcctgtctgcctgctttatatagcaagccatggccacatgactcactgtctgATGGAGCAAACCATTTTCGTGAGCGggatggtgtacctaataaattgccttgttattgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130820 lncRNA upstream 7485 12430935 ~ 12555437 (+) True LOC118944185
TU130876 lncRNA upstream 27576 12530852 ~ 12535346 (+) True G114167
TU130866 lncRNA upstream 87208 12474372 ~ 12475714 (+) True G114161
TU130828 lncRNA upstream 147997 12412044 ~ 12414925 (+) True G114144
TU130819 lncRNA upstream 154002 12407008 ~ 12408920 (+) True G114140
TU130917 lncRNA downstream 2408 12618605 ~ 12619236 (+) True G114192
TU130918 lncRNA downstream 7111 12623308 ~ 12624145 (+) True G114193
TU130919 lncRNA downstream 7985 12624182 ~ 12624405 (+) True G114194
TU130922 lncRNA downstream 9521 12625718 ~ 12626847 (+) True G114196
TU130923 lncRNA downstream 12517 12628714 ~ 12628969 (+) True G114197
XR_005039499.1 mRNA upstream 90492 12472240 ~ 12472430 (+) False LOC118944185
XR_005035111.1 mRNA upstream 262965 12299539 ~ 12299957 (+) False LOC110511179
XM_036938016.1 mRNA upstream 1104491 11416206 ~ 11458431 (+) False LOC110510416
XM_036938166.1 mRNA downstream 57888 12674085 ~ 12680150 (+) True LOC110510520
XM_036938201.1 mRNA downstream 100377 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 100377 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 100377 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 100377 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 853145 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1080181 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1147744 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1289922 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 104211 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 104533 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 146035 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 333163 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 1005780 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile