RNA id: XM_036938166.1


Basic Information

Item Value
RNA id XM_036938166.1
length 723
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110510520
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12674085 ~ 12680150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACCTGTAGGCCCGTTTAGTTGAGACTTTACGGTAGTAGACGCGCTCTACCAGCTGATCTGTCATTTCAGACCTCCACGGGCTTCAGAGCAGGAACTTCTTTGTTTTAAGTGAAGACTTTTTTTTGTGTCCAATTCTAATCATGTCTTCGATCATCAGGAAGATAATCAACACCACTAAAGCGCCAGCAGCTATCGGGCCGTACAGCCAGGCGGTGGTGGTGGACAGGACCATGTACGTGTCAGGCCAGCTGGGGATGGACCCTGCCTCTGGTCAGCTGGTGGAGGGAGGGGTCCAGGCTCAGACCAAACAGGCTCTGGTAAACATGGGGGAGATCCTGAAGGAAGCAGGGTGTGGATATGACAGTGTCGTGAAAACCACAGTTCTTTTGGCTGACATGAATGACTTCGTCAGTGTGAATGATGTCTATAAAACATTTTTCAGCAGTAGCTTCCCAGCTAGGGCTGCCTACCAGGTCGCTGCTCTGCCCAGGggtggGCTTGTAGAGATTGAAGCTGTTGCTGTTCTGGGCCCTCTGACTGAGGTCTCTTGATGTAGCCTAAACGTCAGCGACAGAACAGGAAAAAAATCAACAACTCCCATGTCCCATAAAATGACGTGCCATCACAATACCAGCGTATAGTGAATCATTTCCATTGGTTAAGATGGTCCAATAAAACATCACTTCCTGTTTAAAAATAAAGTCAAAACAAATGAATAGAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019239 deaminase activity molecular_function

KEGG:

id description
K09022 ridA, tdcF, RIDA; 2-iminobutanoate/2-iminopropanoate deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130943 lncRNA upstream 167 12673659 ~ 12673918 (+) True G114217
TU130936 lncRNA upstream 15573 12657714 ~ 12658512 (+) True G114210
TU130935 lncRNA upstream 16449 12657259 ~ 12657636 (+) True G114209
TU130934 lncRNA upstream 17445 12656309 ~ 12656640 (+) True G114208
TU130925 lncRNA upstream 32936 12640691 ~ 12641149 (+) True G114199
TU130946 lncRNA downstream 1283 12681433 ~ 12682686 (+) False G114220
TU130948 lncRNA downstream 1283 12681433 ~ 12682686 (+) False G114220
TU130949 lncRNA downstream 1283 12681433 ~ 12682686 (+) False G114220
TU130950 lncRNA downstream 1283 12681433 ~ 12682587 (+) False G114220
TU130951 lncRNA downstream 1283 12681433 ~ 12682686 (+) False G114220
XM_036938134.1 mRNA upstream 57888 12562337 ~ 12616197 (+) False LOC110513835
XM_036938136.1 mRNA upstream 57888 12562343 ~ 12616197 (+) False LOC110513835
XM_036938137.1 mRNA upstream 57888 12562357 ~ 12616197 (+) False LOC110513835
XM_036938135.1 mRNA upstream 57888 12562922 ~ 12616197 (+) False LOC110513835
XM_036938142.1 mRNA upstream 57888 12562922 ~ 12616197 (+) False LOC110513835
XM_036938201.1 mRNA downstream 36424 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA downstream 36424 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA downstream 36424 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA downstream 36424 12716574 ~ 12776832 (+) False spag1b
XR_005035124.1 mRNA downstream 36424 12716574 ~ 12776832 (+) False spag1b
TU129672 other upstream 964308 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1191344 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1258907 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1401085 11261554 ~ 11273000 (+) False elovl4a
TU131040 other downstream 40258 12720408 ~ 12720693 (+) True G114243
TU131041 other downstream 40580 12720730 ~ 12721315 (+) True G114244
TU131068 other downstream 82082 12762232 ~ 12762827 (+) True G114263
TU131145 other downstream 269210 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 941827 13621977 ~ 13623965 (+) True LOC110520769

Expression Profile