RNA id: XM_036938172.1


Basic Information

Item Value
RNA id XM_036938172.1
length 4100
RNA type mRNA
GC content 0.54
exon number 4
gene id LOC118937723
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12683093 ~ 12715610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGGGTTTTCCTGAATGAGAGGATAGGGGGCGGAGTTGATCAACACCATCTTACCTAAACTACTTTCCTaatgttaagagagagagagagagagagggagcagagttgaGGGTCTTCATTTTATCCAGACAGTGTCTAACGCGTGGTTAGTGTGCGGAGCACAACAGTCCGTTGTCTAGGGCATGACGGCGACTAGCCATGCATAAAcagacagggcagacagacaaCAGGAAATAATGGGCTCCAGCTATACCTCATAAACAACCAGCTTGTTGTTCTGTTCATGTTTTATCCAGCCAGTCGCTGTCTGAGTTGACCGAGTATCGACCGTTCGCATCTAGTCTCAGTCTTCTTTCCATattttctcttcatctctcctctctttttcttcttcGCCATGGGATGTTCTTCGTCCAGCACACAGACTGTCGATGAGGAGAAGAGACCGGGGACAAAACCCGAGGAGTCCAACGGAGACACATTTGTTGTCGGGAATGGTCACATCTCGGAGGACACGGAGACCATCGCTGACCAGATGCAGCTTCCTGTCCAGAGTGCCCTGACTGATGACTCTGAGGAACCCGTCATCATGGCCTCAGAGGCCCTGGAGACCATGGGGTCTGGATGGGAGGAGGACCAGGTCCTGGAGATGCTGGCTGCAGCCGAGCCAGAGGTTCCCCCTGAAGCCCCTGCTGAGGCTGCAGCTGTAGTTGCAGAGGTCCCTTCAGAGGCTGTGTTCTTAGTAGAGGCTGTGGTCCCAGTGGAGGTGGTGGCCCCTGTTGAGGCTGTCGTGGTTGAGGCCGCTCCTGTGGCAGAGGCTCCTGCTGAGACAGTGGTGTCTGAGGAGTCCCCTGTTGTTGAAACTGGAGCTGCAGTGGAGGTGGCTACCCTTGTCGAGGCAGCTGCACCTGTGGAAGCTGCTGCCCCAGTCGAGGTGGCTGAAACtgtcccagaggctgctccagcCCCGACAGAGGAGACCCCAGCTCCAGCCCCGACAGAGGAGACCCCAGCTCCAGCCCCGACAGAGGAGACCCCAGCTCCAGCCCCGACAGAGGAGACCCCAGCTCCAGCCCCGACAGAGGAGACCCCAGCTCCAGCCCCGACAGAGGAGACCCCAGCTCCAGCCCCGACAGAGGAGACCCCAGCTCCACCCCCGACAGCGGAGACACCAGCTCCAGCCCCAAAAGAGGAGACCAAAGATGCTCCAGCCCCTGTGGCCGCTGTCCCTGAGCCAGTAATCCCTGCTGCTGAGCCTGTGGCCGCTGTCCCAGAGGGGGCCCCCGCTGTGGAGGCCCCTGTACCCAGTGGCCTCATAACTGACCTTGTTGTTGCTGCTGAGCCTGCAGCAGAGCCAATAACCACCCCTGTGGCTGTGGAGGCCCCTGTAGCAGCCGTTGCCAATGAGCCTGTagaggccccaggaccagtggaggCCCCAGGTGAGGTGACAGCTCCAGCCCCAGAGCCTGCAGTAGAGACTCCTACCCCTGCTCCCGAAGCCGCCCCTGAGCTAACACCAGCCGCCCTTGCTCCTGCTCCCTCAGACGCCCCTACCCCTGCCCCAGAGCTAACACCAGCCACCCCTGCTCCTGTGGCCCCGCCTACTCCTGCCCCAGAGCTAACACCAGCCACCCCTGCTCCTGTGGCTCCGCCTACTCCTGCTATCTCAATCCCAGAGATTGATGGTGTTCCGGTGGTTGTGTCGGAGGTGGCACAGGAAGCAGCGGCCTTGGTGTTGGCTGGAGTGGCACAGGAAGCAGAGAAAGACAAGAAACAGAACTAAGAAGAGAGGTCAAACTGAGGAGGCCGCTGTGGCCTGGGAAACACAACCTTCTTGGATAAAACCTCCGTTTTTACATTCAGAGACGATTTGTAGATAAGATGCACAACCCAAAGACCAGGAAgttaaaaacacacatacactaatCTGCTACAACGATGACAGACCAGGAagttaaaacacacatacactcatcTGCCACAACGATGACAGACCAGgaaattaaaacacacacacactcatctgctACAACGATGACAGACCAGGaagttaaaacacacacacactcatctgccACAACGATGACAGACCAGGaagttaaaacacacacacacaatcatctgCCACAacgatgacagaccagctcaatacATATTCCTGtcagggtgtgtcccaaatggcacctaattCCCTGATGAGGGGATAAGGTGTAATTTCAGACGGAGAGTCTTGTCACCAAAGTGCCTTCCCATCCTGGAAATATGGATGGGTCACTTTTCTTCTTCTATTGGCAATAACATTAAAAGAGAATTACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCACGGAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAATCTGGAGACACCGGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTAGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCTACCATGTAGCCTGGAGACACATGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAGCCTGGAGACACCTGGGCTTCCTACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAGCCTGGAGACACCTGGGCTTCCAACCATGTAGCCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCTACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACCCCTGGGCTTCCTACCATGTAGCCTGGAGACACCTGGGCTTCCAACCATGTAGCCTGGAGACACCTGGGCTTCCAACCATGTAGCCTGGAGACACCTGGGCTTCCTACCATGTAACATGGAGACACCTGGGCTTCCAACCATGTAACCTGGAGACACCTGGGCTTCCAACTGAACTCTCCGACTCCCAATAACCTGGAGCCACCTGGGCTTTCAACTGAACTCTCTGACTCCCAATAACCTGGAGCCACCTGGGCTTTCAACTGAACTCTGACTCTCTCTAACAGACAGCTGTGTTGAAGCCAAACGATGCACTACTTTAGCAACAAACTGTGAAGTTGAGGTTCAGAGACAGACTACACGGTCACTTTAAGGTTGTCAATATGGAGTCAACGTTGTGTTGAACAGCTTCTCGGTGGGAGAATGTTTCATAATAAATACTACTTGACTTTTACTAGCTGCTCTGAAAGAGGAAGACAAGCCAAACAATCTAACAAACTGTTCTTCTGGACTAGACTGGACCCCGCTGATGTGGAACTCAACCTAACAAACTGTTCTTCTGGACTAGACTGAACCCTGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCCGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGGGGGACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGGGGGACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATGTGGAACTCAACCTGTTCTTCTGGACTAGACTGAACCCTGCTGATgtgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131278 lncRNA downstream 2948 12674092 ~ 12680145 (-) False G114410
TU131277 lncRNA downstream 2948 12679680 ~ 12680145 (-) False G114410
TU131279 lncRNA downstream 2948 12679680 ~ 12680145 (-) True G114410
TU131286 lncRNA downstream 12590 12669799 ~ 12670503 (-) True G114414
TU131283 lncRNA downstream 31122 12650448 ~ 12651971 (-) True G114413
TU131309 lncRNA upstream 2689 12718299 ~ 12718760 (-) True G114433
TU131311 lncRNA upstream 7852 12723462 ~ 12724722 (-) True G114435
TU131312 lncRNA upstream 8222 12723832 ~ 12725375 (-) True G114436
TU131321 lncRNA upstream 23632 12739242 ~ 12739759 (-) True G114443
TU131328 lncRNA upstream 32219 12747829 ~ 12749050 (-) True G114450
XM_036938159.1 mRNA downstream 9219 12639702 ~ 12673874 (-) False pop1
XM_036938156.1 mRNA downstream 9267 12639702 ~ 12673826 (-) False pop1
XR_005039515.1 mRNA downstream 65399 12617506 ~ 12617694 (-) True LOC118944197
XR_005035115.1 mRNA downstream 129574 12549299 ~ 12553519 (-) False LOC118937718
XM_036938224.1 mRNA upstream 98040 12813650 ~ 12890396 (-) False LOC110525147
XM_036938228.1 mRNA upstream 98040 12813650 ~ 12890396 (-) False LOC110525147
XM_036938238.1 mRNA upstream 208862 12924472 ~ 12934534 (-) False pabpc1a
XM_036938245.1 mRNA upstream 208862 12924472 ~ 12934534 (-) True pabpc1a
XR_005039490.1 mRNA upstream 209747 12925357 ~ 12925439 (-) True LOC118944179
TU131258 other downstream 69413 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 97953 12584027 ~ 12585140 (-) True G114390
TU130213 other downstream 1024425 11626535 ~ 11658668 (-) True LOC110513475
TU130157 other downstream 1330352 11349342 ~ 11352741 (-) False G113733
TU131319 other upstream 19704 12735314 ~ 12739157 (-) True G114442
TU131498 other upstream 376482 13092092 ~ 13093765 (-) True LOC110507534
TU131755 other upstream 580223 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 615138 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 615138 13330748 ~ 13332506 (-) False G114812

Expression Profile