RNA id: XR_005035122.1


Basic Information

Item Value
RNA id XR_005035122.1
length 4546
RNA type mRNA
GC content 0.51
exon number 20
gene id spag1b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12716574 ~ 12776832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGGAGTTGCTCGGTTgatgagatacacacacacacaggtcgcTAGATAACTTTACATCGTAGCGAGTTATTATTTCTCTAAATATATACAATTTCTCATTCCGTCCGTGACACGGGTTGTTGTTTGGTCAGCCATGAATGCAGAGATAGTTTCCTCACTTCTAACTCAAGAGGTGCCAGCGGGGACCACTTCTGCCGCAGCAGTTCCAGTGGATCACCTAGACTACGGCTACATTGACAAATGCACTGATGTGAAATACTTGGCCAAGATGCTGAGGGTGCTAAGGTCTGGAGATGAGGGCATCTATCCTCATCTGATACAGTTCTGTGAGAGTCGTCTGGAGAGGCTGGACCCTAAAAGTCGGGCCCTCAGAAAGGACAACCCCCCAGCCACCGCCTGCTTCTCTGCAGATGAATGGGGTCAGATCACGGACGAACTCAAGAAGTGGGAGACAGATGCCAAAATGAGTGAAACTGAGCTGAAACAACAATCTATATTCCATGATCTTGAAACTGAGAATCTACCCCCAGTACGTGGATCAAGTTGCTCTATTCCTCTCAAGCAGAATACAGTTTCAAATGGACAGAAGAAAACTGCACTGAAGAAGGTTCTGCCTCGTAATTATATAGAATGGGACAAGTTTGATGTCGACAAGGAGTGTGATAAAATTGATGGAAATGTAACAAAAAAGGATCCCCCTGCAATTGTAAACTCTAGACATCCAACAATCAGGAGCAAAATGGATACAACAGCGTTGACTGAACAGGAGAAAGTCCTCGTTGCCAACCGCGAGAAGGATAAAGGCAACGAGGCCTTCAAGGCCAACGACTATGAGGAAGCTGTGGTGTATTATACAAGGAGTCTGTCAGTGGTACCAACCGTAGCCGGCTACAACAACAGAGCCCAGTCAGAGATCCAACTGCAACACTGGCACAATGCCCTCAACGACTGTCAGAAGGTACTGGAGATGGAGCCAGACAATATGAAAGCTCTCCTCCGCAGGGCCACAGTGCTGAAACAACAGGGGAACTATCAGAGGGCTGCTGAAGACCTGAGGAACGTCCTGCAGACCGAACCACAGAATATCACTGCTACTAAACTTCTGGTTGAGGTGGATAAGAAACTAATCCAGTGTCAACCGCAGACAGAACGTAAAAGCAAGAGGATCCTGATTCAGGAAGTGGAGGAGGATGAGATACGGGAAGAGCAGAGAGCTTGTCCGGTTGAGCCTAGCGAGGCAGTGGGAGGGGAGAGTGCCGCTGCTGCTCCTGCCGAGAGGGGAGACATGGGAAATGCTCAGAAGAAGCCCCACggcagaggaggggaagggggccCCAGCCCGCATACAGACCACAATTCACACGGAAGCCACTGGAAAAACCGGGGAGGAATTGCAGAGAAGTACAAGGTGAACCAACAGGAGTCGACGTCGGACAAGGGTCTGTGGAACGGAGCTCAGGGCTCTGGCAGGAGGGACTCTAAGGGAGCCAGGCCGGTCGGGGGAGACGGAAGCAACCTTGACGCCCCTTGTGGGGCCCTGCCCCCGCCGTTGGCCCGGCTCAAGAACGAGGGAAACCTGTTCTTTAAGAATGGACAGTTTGCTGATGCGCTGGACAAATATTCACAGGCCATCACGGGCTTCACAGACTCAGGACTGGACAGTCCTGAGGACCTGTGTGTGCTCTACTCTAACAGAGCAGCCTGCTACCTGAAAGATGGAAACAGCTCTGAGTGTATACAGGACTGCACCAGGTCCTTGGAGCTGCAGCCCTTCTCCCTCAAGCCCCTCCTACGCAGAGCCATGGCTTATGAGACTATGGAGCGGTACCGACAGGCCTACGTGGATTACAAGACCGTGCTGCAGATAGATATCAGTGTGCAGGCTGCACACGACAGTGTTAACAGGATCACGCGGTTACTGATAGAGCAGGACggagagcagtggagagagaaACTACCTGAGATCCCTCTGGTCCCACTATCAGCTCAGCAGCACCGCAGGGAGGAACCACCCAGCGCTGAGGTCCTACAGGCCAGAGCAGAGAAGGCCAAGCAGCACGCAGCTCAAAAAGCAGAAGTCTGTTTCAATTCGCTGAAACAAGAAGGAAACGAGTTTGTGAAGAAAGGTCAGTTCCAGGAGGCTCTGAGGACGTACAGCGAATGCCTTAAACTGAAGCCAGAGGAATGTCCCATCTACACCAACCGAGCGCTGTGCTTCCTGAAGCTAGATATGTTTGCTGAAGCCAAGCAGGACTGTGACTCTGCCCTGAGGCTGGAGCCAGCCAATAAGAAGGCCTTCTACAGACGGGCCATGGCCAATAAAGGCCTCAAGgactacctggcgtGCAGCTCTGACCTACAGGAGGTGCTACAGCAGGATCCCAACGTAGCGGAGGCTGAGAAGGAGCTGGAGGAGGTCACGCTGCTGCTCAGACAGAGTCTGGCCCGGGGATCACCTAGCAACCCCAGGAGGACTGTACCCATCACTGAGGTTGAGGGGACTGAGGACGAAGACCGCCAGGCTGCAGAGCCAGACAGGACCAAAGCAGCAGAATCAGAGACAGCAGAAACATCAACAACATCCACGTCAACCCCAGGCCCAGCAGAGAACcactgtggaggaggaggaagaggaggagaggaggaggcaatAACCATCAACCTCCAGCCCTCGAACGCCTATGAGTTCAACCAGTCCCTGAACGCAGCGCGGGCCCAGTCCAACCTCCCAGCCTGTGCTGAGCTGCTGAGCCGTGTTCCCCCTGAGACTCTGCCCGTCTACCTCAGTAATCAGCTGGATGGACACACAGTCAGCTTCCTTATGCAGGCCCTGGACACACAGCTCCTACAGAAGGACCCTGACCTCGTCTACCAGCACCTCAACCATCTACACACTGCTGACAGGTTCTCGGTCGTCGTGATGCTGCTAAAGAGTGAACATGATCAGATGACTCGACTGTTTGACCGTCTGTCTGCTGTGGACAGTGATGCCTTCAGTAAGAACGATGTGCAGAACCTGGCCAACAAGTacatctgacctctaacctctgaccctgTCTGGCCTGCTGGAGCGCATCCCCAATAGGTCCCTATTACCGAGTGCACTATGGAGGGAATAAGGCACCATTTGGAAACATCACAGCCGACTTTAAATACGAGTCCAGACTGCAAATCACCTTGCGTCATAAATAACCTCTCAATATTATTTTGTAGGTcaagtcacaatttacccatgatacacCACGGTTTTGATGTTCTCAAACGCGACCCTTCACTCTGTCCTGCGTGAAGCTCCCAACATGACGTACTGGATCTATGCAACGTTGCACAACACGACTCAGAAGATGCTGAACGAGCTCAGAGCATTACGGACCCAAAccgacctgtctctttctctctgtgtaatATATCACATCTCTACCGACCTCTACTAGGTATTTCTCTCTGTGTGATATATCACATCTCTACCGACCTCTACTAGGTATTTCTCTCTGTGTAATACATCACATCTCTACCGACCTCTACTAGGTATTTCTCTCTGTGTAATATATCACATCTCTACCGACCTCTACTAGGTATTTCTCTCTGTGTAATATATCACATCTCTACCGACCGCTACTAGGTATTTCTCTCTGTGTAATATATCACATCTCTACCGACCTCTACTAGGTATTTCTCTCTGTGTAATATATCACATCTCTACCGACCTCTACTAGGTATTTCTCTCTGTATAATATATCACATCTCTACCGACCTCTACTAGgtatttctctctgtgtgtaatatATCACATCTCTACCGACCTCTACTAGGTATTTATCTCTGTGTAATATATCACATCTCTACCGACACCTCTACTAGGTATTTCTCTCTCCAAAGACCTTTTTCACCCTGATCTGTTTTAGTTGACCGACAGTAAATGTTGTGAATTATTTAACTTTTAAAAAACATCAACGCATAAGGTCCAATGTTCCACGATATCTGTCAGCATTTCCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTCTCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTCTCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTTCCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTCTCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTCTCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTCTCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTCTCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTCTCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATCCTCCTGCTGGGTCCGTGTTCTGCGGGCCAGGTCCATTCTCCAGCCTGCAGAACCTTGACTACTTTCCCAGGCTGCTTTGACTGGCCAATAGGACGGTTGATTTGTTTCCCgggtgtgatttttttttttaaagcttggAAGACATAACGACTTGAATTGACCGGGCTAGCGTTAGCCCCAGAGGCTATTCAGAAAACAACATGTTGTTGTACAGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130976 lncRNA upstream 385 12715933 ~ 12716189 (+) True G114234
TU130966 lncRNA upstream 20141 12696180 ~ 12696433 (+) True G114228
TU130955 lncRNA upstream 30707 12682744 ~ 12685867 (+) False G114221
TU130956 lncRNA upstream 30707 12682744 ~ 12685867 (+) True G114221
TU130953 lncRNA upstream 31877 12682744 ~ 12684697 (+) False G114221
TU131076 lncRNA downstream 3479 12780311 ~ 12780669 (+) True G114271
TU131077 lncRNA downstream 33090 12809922 ~ 12810124 (+) True G114272
TU130978 lncRNA downstream 36848 12813680 ~ 12817484 (+) False G114235
TU130979 lncRNA downstream 36848 12813680 ~ 12817484 (+) False G114235
TU130980 lncRNA downstream 36848 12813680 ~ 12817484 (+) False G114235
XM_036938166.1 mRNA upstream 36424 12674085 ~ 12680150 (+) True LOC110510520
XM_036938136.1 mRNA upstream 100377 12562343 ~ 12616197 (+) False LOC110513835
XM_036938231.1 mRNA downstream 136799 12913631 ~ 12916798 (+) True LOC110525149
XR_005035129.1 mRNA downstream 149989 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 270047 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 270047 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 270047 13046879 ~ 13061306 (+) False LOC110507515
TU129672 other upstream 1006797 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1233833 11477976 ~ 11482741 (+) True G113313
TU129492 other upstream 1301396 11414931 ~ 11415178 (+) True G113285
TU129360 other upstream 1443574 11261554 ~ 11273000 (+) False elovl4a
TU131145 other downstream 172528 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 845145 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 924778 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1184429 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1365050 14141882 ~ 14144267 (+) True G115190

Expression Profile