RNA id: XM_036938231.1


Basic Information

Item Value
RNA id XM_036938231.1
length 2203
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110525149
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12913631 ~ 12916798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTGGAGTGGTGGACTTCCTGTCTCACAGTATTTAAGGCTCAGACGTACATGCTGTATTGTCACTGGGTGTGCACCGTGAGTATCTTTGATTTGATAGGCGCTACAAGACGAACGCCAGTTAATCTAATTGACCCACCAGGAGCACAACAGGAAAATATTAAGGCCCTTGAACTCGGGAATGTGAAGAACCCTGCCATCAACCTGTTCCTGCAACAACAAGCATCGCCAAGGATGGCTGGAGAAAACCTCTACAATGTCACGGACGACGTCCCGTCCACTTGGAGCATCGTTGAAACCGTCGTACAGTGGACAACGTTCTCCATCGGCTTTCCTCTGATCTGTCTGTCCATTTATGCCATGTACTTCCTGATCCGAGCTGATCACATCGCTCCGGTCTACGTTATCAACCTTCTTATTGCAGATCTCGTTCAGATCTGCATGAGGCCGTTCAACCCGTCTGGTACCTGGAAAATGATTGTACTTTTGATTGATTTCTTTGGTATCAGTGCAAGCATTAGTTTCATGGTATGTGTTGCTCTGGAGAGATATCTTGTGATTGCATTTCCTCTCTGGTACCGTTTTCGTCGTAACATCAAATACTCGCTCATAATGTCCTCCTTTATCTGGGTTATCCCTTTCATCCAAATCTGCATGTTGTACCTCACACCGACTTTCGAGAGGAAACTGATTCTGTTTGCAGTTAACCTCCTCATACCCTTTCCACTGCTCGTATTCTTCCTCGTGGGCACGTTGAAAGCTCTGTCCGTCTCCATCTCTGTGCCAGCTGTCGAACAGAGACGGATTATTGGTACCCTGGCCCTTGTGCTGGGCAATTACACAGTCCTGTTCCTACCCCTCATCATACAATATCTGATATCAGGGGTAACAGGCCGAACAAATGTAAAGATCGGGACCCTCTTTGAGAGATTCAGCCCCCTTGTGGATCCCCTACTCTATGTGTTCATGAGAAAGGGAGCTAAGGACACTCTGGCCTTCCCCTGCTTCGGCAAGCTCATGGGTGACGAGGAGCAGAGTCAGGTCACCAACACTATGACCATGACTGATAGTGTAGTAGAAGGCTCCAGGTAGGACAGATGCAGGGTAATGGACTGTATCTGTACGATTCACTATGTATAACTCCTatcaactctaaccactaggctaccctgcctcctctacactctaaccactaggctaccctgcctcctctacactctaaccactagggtaatGGACTGTATCTGTACGATTCACTATGTATAACTCCTatcaactctaaccactaggctaccctgccgcctctacactctaaccactaggctacccagcctcctctacactataaccactaggctaccctgccgcctctacactctaaccactaatgGACTGTATCTGTACGATTCACTATGTATAACTCCTatcaactctaaccactaggctaccctgccgcctctacactctaaccactaatgGACTGTATCTGTACGATTCACTATGTATAACTCCTATCAACTCCTTGTTCAAATTATCGGATCGAAACGAAGCTTTAACAGTGTTCTCTTCTTTGTTAAAATTATACCTTtacgggcctcccgagtggcgcagtggtctaaggcgtcactacagacccgggtttgattccaggctgtgccataaccggccgcgaccgggagtcCCAAGTTACCGGCACACAATTTTCCCAGCATTGTCCcgctaggggagggtttggccagggggggatttacttggctcatcgcgctctagcgactccttgtggcggcccgggcgcctgcaggctgacttcggttgccagtggacggtgtttcctccgacacgttggtgcagctggcttccgggttaagcgtgcGGGTGTTAAGGTGTGCGGTTTGGctggtcatgtttcggaggatgcaaccttagctgcaactccccaacgggctcgggggaggcaatgagacaagatcgcaattggatagcacgaaattggggaggaaaaagggggttaaaaaatgtattgttttattgtTGTAGTTAAAATGTGAAGAGTACATGCCTTGCTTTTTTATATAAAATacatgacatactgtattgtacacAGCCCTATTCTGCATTGCGCTATCTGTGTTGGGCTTGTATTGCAGCTTTTCAGAAAAATATGGACTTGTTTCCTTCAATAAACTGATAATGTGGATATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131112 lncRNA upstream 42370 12867943 ~ 12871261 (+) True G114297
TU131107 lncRNA upstream 58899 12853063 ~ 12854732 (+) True G114292
TU131084 lncRNA upstream 74544 12838745 ~ 12839087 (+) True G114279
TU131078 lncRNA upstream 86823 12826520 ~ 12826808 (+) True G114273
TU131036 lncRNA upstream 88728 12823748 ~ 12824903 (+) True G114239
TU131101 lncRNA downstream 7674 12924472 ~ 12925273 (+) True G114286
TU131139 lncRNA downstream 20775 12937573 ~ 12938036 (+) True G114319
TU131140 lncRNA downstream 27398 12944196 ~ 12969839 (+) False G114320
TU131141 lncRNA downstream 27398 12944196 ~ 12946435 (+) True G114320
TU131143 lncRNA downstream 34999 12951797 ~ 12954057 (+) True G114322
XM_036938201.1 mRNA upstream 136799 12716574 ~ 12776832 (+) False spag1b
XR_005035119.1 mRNA upstream 136799 12716574 ~ 12776832 (+) False spag1b
XR_005035120.1 mRNA upstream 136799 12716574 ~ 12776832 (+) False spag1b
XR_005035122.1 mRNA upstream 136799 12716574 ~ 12776832 (+) False spag1b
XR_005035124.1 mRNA upstream 136799 12716574 ~ 12776832 (+) False spag1b
XR_005035129.1 mRNA downstream 10023 12926821 ~ 12927702 (+) True LOC118937726
XM_036938259.1 mRNA downstream 130081 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA downstream 130081 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA downstream 130081 13046879 ~ 13061306 (+) False LOC110507515
XM_036938278.1 mRNA downstream 130081 13046879 ~ 13061306 (+) False LOC110507515
TU131068 other upstream 150804 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 192316 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 192938 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1203854 11708603 ~ 11709777 (+) True G113396
TU129561 other upstream 1430890 11477976 ~ 11482741 (+) True G113313
TU131145 other downstream 32562 12949360 ~ 12964930 (+) True G114323
TU131856 other downstream 705179 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 784812 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 1044463 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1225084 14141882 ~ 14144267 (+) True G115190

Expression Profile