RNA id: XM_036938238.1


Basic Information

Item Value
RNA id XM_036938238.1
length 2980
RNA type mRNA
GC content 0.51
exon number 11
gene id pabpc1a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12924472 ~ 12934534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCACATGTTCATTCCCTTCTGCGTAGCTACGCTAGAGTGTGTTCCGGAGCCTCGGCACACATTTTATtatcaaaaaaaaaacacaaaaaaaatatataaaataaataaacacaaggGAAGATTATTTTTTTgtaagaaaaagaaaaactcggTGAAGCAGGACTAACAAGTAACCCGTCGAAAATAGGACGAGATTTCGGAAGAGAAGGTCATTTTGTTCCATTTGATAACATTGTTGGAAAGGCGTTGGGTGATTTCATATCAATAGTTAACCGagacattttattattattttttattagctagaAGCTAACGTAGCAGGGTCTTTTTTTGTTGTCGATATCGCATCTGTTATTATTGTAACGTTAACTAGTCGTAGTTTAAGACATATTGTAGCTACTAGTAACTTTTGTTTTCTCCAGAAGGTAACGTTAGCTCGCTAGACACCAGGTAGCAGAATTAGCCAGCCGGCCCGCATTGCTTTTTTTGCGGCCTAAGTGCGAAGTAGTTAAcgtccaaaacattttttttattttattttttagcaaGCAACAAATCTTCGGTGTCACAAGACACCATTTCACAGACGTTAACCTGACAACGTAACGTGTTTATTACCCTCCCGTATTATTTAAAAAACCTAAAACCCCGATCCGGTAGACATGAATCCAAGCGCCCCCAGTTACCCGATGGCCTCCCTTTACGTGGGCGACCTGCACCAGGATATCACCGAGGCCATGCTGTACGAGAAGTTCAGCCCCGCCGGGCCTATCCTCTCCATTCGAGTCTGCAGGGACATGATCACTCGTCGATCCCTCGGATATGCCTACGTTAACTTCCAACAACCAGCCGATGCTGAACGTGCCCTGGACACCATGAACTTCGACGTCATCAAAGGGAGACCCCTGCGTATCATGTGGTCTCAGCGTGACCCATCCCTGAGGAAGAGTGGGGTGGGCAACATCTTCATCAAGAACCTGGACAAGTCCATTGACAACAAGGCCCTCTATGACACCTTCTCGGCGTTCGGAAACATCCTCTCTTGCAAGGTGGTTTGTGATGAGAATGGCTCAAAGGGATATGGCTTTGTGCATTTTGAGACCCAGGAGGCGGCTGAAAGAGCCATTGAGAAAATGAACGGCATGCTGCTCAATGACAGAAAAGTGTTCGTCGGACGCTTCAAATCCCGTAAAGAGCGCGAGGCTGAGCTCGGAGCCAGAGCCAGAGAGTTCACCAACGTGTACATCAAGAACTTCGGAGAGGACATGGACGACGAGAAGCTGAGGGAGCTGTTCGGGAAATATGTTCCAGGACCGGCCCTGAGCATCAGGGTGATGACGGACGACAGCGGGAAGTCCCGGGGGTTCGGCTTCGTCAGCTTTGAGAGGCACGAGGATGCTCAGAGGGCTGTAGACGAGATGAACGGGAAGGATTTTAACGGCCGTCAGGTCTACGTGGGCCGAGCCCAGAAGAAGGGAGAGCGCCAGACGGAGTTGAAACGCAAGTTCGAACAGATGAAGCAGGACCGCATGACCCGCTACCAGGGGGTCAACCTGTACGTCAAGAATCTGGACGATGGCCTCGACGACGAGCGTCTGAGGAAGGAGTTCTCTCCTTTCGGTACCATCACCAGCGCCAAGGTGATGATGGAAGGTGGTCGCAGCAAGGGCTTCGGCTTCGTGTGCTTCTCCTCCCCGGAGGAGGCCACCAAGGCCGTGACGGAGATGAACGGGCGCATCGTGGCCACCAAGCCGCTGTACGTGGCGCTGGCCCAGAGGAAAGAGGAGCGCCAGGCTCACCTCACCAACCAGTACATGCAGAGGATGGCCACCGTCCGGCCCGTACCCAACCCAGTCCTCAACCCCTACCAGCCTGCCCCTCCCTCCGGGTACTTCATGGCTGCCATCCCCCAGACTCAGAACCGCGCTGCCTACTACTCCACCAATCAGCTGGCTCAGCTGAGACCAGGCCCACGCTGGGCCACCCAGGGTGTCAGACCACAACACTTCCAGAACATGCCCAACGCCATGCGTCCGTCCGCCCCCAGGCCGCAGGCCTTCGGTGCCATGAGGCCCTCGTCCTCCCAGGTGCCACGTATGATGGCCGGCCAGAGAATGGccaCCCAGGCCCTGGGCCAGCGTCCTGCCGGTACGGCGGCTGCTGCAGCCCCGGTGAGGATGCCTCAGTACAAGTATGCAGCGGGCGTGAGGAACCCCCAGCAGCACATGGCCAGCCAGCCCCAGGTGCCCATGCAGCAGCCGGCTGTCCACGTCCAGGGACAGGAGCCTCTGACGGCCTCCATGCTGGCGGCTGCTCCTCCTCAGGAACAGAAGCAGATGTTGGGCGAGCGTCTGTTCCCTCTCATCCAAAACATGCACCCCAGCCTGGCTGGAAAGATCACCGGCATGCTGTTGGAGATAGACAACTCCGAGTTGCTCCACATGCTGGAGTCTCCCGAGTCTCTCCGCTCCAAGGTGGACGAGGCTGTTGCTGTGCTGCAGGCTCACCAGGCCAAGGAGTCCGCCCAGAAGCCCACCAACCCCGCCGGAGTCCCCAGCTAAGAACCGaGACGGTAATCCTTTTAACTTTGCTTCACCGAAGAAAATGGTAGAAAAAATTTAAACATGGAAAAAAACCCTGAAAACTCTGAAAACATTGCAAAAAATGAATAAAGTTATTTCTTTACAAAAAATGAATACAACATCATCTGCCGGGTCTAGAGAAGATTTAAGCTAGTCCTTGTTATTAAAAGTTACAAAAgtggacaaaaacaacaacaaaaaaatagcaAAAACGATCTTAATTATTGAAAAATGTTTGACAAAATGTGACCATAAAATAAAAGACATTCCATTGTTTTATTTCCTCTTCCAGTATCAGTCCTCAGAATATCAGCTGTTGTGTTCAGAGATCAGATAGCTGAGTGCTTTGTCATTTGGATTGAAAACTGCTAAATAAAGATATCAAACACTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131390 lncRNA downstream 5471 12918342 ~ 12919001 (-) True G114497
TU131347 lncRNA downstream 34099 12865537 ~ 12890373 (-) True LOC110525147
TU131376 lncRNA downstream 62285 12861467 ~ 12862187 (-) True G114486
TU131360 lncRNA downstream 101564 12819520 ~ 12822908 (-) True G114478
TU131365 lncRNA downstream 103390 12820171 ~ 12821082 (-) True G114479
TU131398 lncRNA upstream 3009 12937543 ~ 12937830 (-) True G114502
TU131408 lncRNA upstream 8951 12943485 ~ 12961942 (-) True G114506
TU131412 lncRNA upstream 53411 12987945 ~ 12988251 (-) True G114510
TU131413 lncRNA upstream 53886 12988420 ~ 12988629 (-) True G114511
TU131415 lncRNA upstream 57764 12992298 ~ 12992590 (-) True G114513
XM_036938224.1 mRNA downstream 34076 12813650 ~ 12890396 (-) False LOC110525147
XM_036938228.1 mRNA downstream 34076 12813650 ~ 12890396 (-) False LOC110525147
XM_036938172.1 mRNA downstream 208862 12683093 ~ 12715610 (-) False LOC118937723
XM_036938186.1 mRNA downstream 208862 12683093 ~ 12715610 (-) False LOC118937723
XR_005035118.1 mRNA downstream 208862 12683093 ~ 12715610 (-) True LOC118937723
XM_036938255.1 mRNA upstream 128556 13063090 ~ 13083743 (-) True LOC110507522
XM_036938296.1 mRNA upstream 151635 13086169 ~ 13093633 (-) False LOC110507534
XM_036938293.1 mRNA upstream 151635 13086169 ~ 13093831 (-) False LOC110507534
XM_036938300.1 mRNA upstream 151635 13086169 ~ 13093831 (-) False LOC110507534
XM_036938298.1 mRNA upstream 151635 13086169 ~ 13094428 (-) False LOC110507534
TU131319 other downstream 185315 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 215157 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 310792 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 339332 12584027 ~ 12585140 (-) True G114390
TU130213 other downstream 1265804 11626535 ~ 11658668 (-) True LOC110513475
TU131498 other upstream 157558 13092092 ~ 13093765 (-) True LOC110507534
TU131755 other upstream 361299 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 396214 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 396214 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 396214 13330748 ~ 13332506 (-) True G114812

Expression Profile