RNA id: XM_036938278.1


Basic Information

Item Value
RNA id XM_036938278.1
length 3066
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110507515
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13046879 ~ 13061306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTTACTTCACCGTCATTTCAATGGCGGAACACTGAAAAAAAGCATTTGAGAGCGGTCAGATTTCGGATATATTGTTCTAGTTACGAACGAGCTGAGTACTTACATTTATCATCTTGGCTAGCTAACATAGTGAACGAATCGTTTTGTCCCAATATTTCTCTTAGTAAACCTTCTGGCTGGGGCATTTCCATCAATTAAAGCACGAGATCCCCGAAATGGCAGATAACAACACAGACCAAGAAAAAGCAATAGCTGCAAATGCGTTGGAGGCGTTTACGGCTGGAAACTATGAGGAATCTTTGAAACACCTTGGAAAGCTGCAAGAGTTGAACAAGGAGGACTACAAGATTGCTTTGAATAAAGCAATAGCTGAATTCTACAAGAGCGGCCAAACCACCACATGCACCCTGAAGCAGACTCTTATTGCAATGAAAAACCAGGTTCACACTTCAATGGAGGATATTGATGGTTTGGATGATGTAGAAAACAGTCTTCTCTACTACAATCAAGCAATCATTCACTACCACATGAGACAGTACTCCGAAGCTATTGCTATTGGAGAGAGGCTGTACCAGTTTCTGGAGCCGTTTGAAGAGAAGTTTGCTCTGGCGGTCTGCTTCTTGCTGGTGGATCTGTACCTGCTAACGTACCAGCCAGAGAAGGCCCTCCATCTCCTTGCTGTGCTGGAGAAACTGTCTGTACAGGGAAATAACAAGAACGGCAAAGGGGAGAGTGTCAACAGCGCCAACAAAGATGGTCGGAACCAGAAGGCAGAGTTCATTGGCATGATCGAAGCGGCAAAATCCAAAATGCACCAGTACAAAGTGCGAGCGTACATTCAGATGAAGTCATCAAAGGCCTGCAAAAGGGAGATCAAGTCTGTGATGAACACAGCAGGGAATTCTGCTTCCTCACTCTTCCTCAAGAGTAACTTTGAGTACCTGAGAGGAAACTACCGCAAAGCAGTGAAGCTCTTAAACAGCTCCAACATCGCAGAGCACCCTGGGGCCATCAAAACAGGTGAATGTGTGCGCTGTATGTTCTGGAACAACCTGGGTTGCATACACTTTGCCATGGGGAAACACAACCTAGGTATATTCTACTTCAAAAAGGCCCTGCAGGAGAACGACCACACGTGTGCACAGCTGGGGGACGGTGGGGCGACGGGGAACGGGCAATCTAAGCAGTTCTCGGGCATCCCCATGTGTGCGCTGCTAGCCAACAAGCGTTATGAGCTGCTGTATAACTGTGGGATCCAGCTGCTGCACATCGGCCGGCCCCTGGCGGCCTTCGACTGTCTGATGGATGCTGTGCAGGTGTACCACTCTAACCCTGGCCTCTGGTTACGGTTGGCTGAGTGCTGCATTGCTGCCAACAAGGGTAGCTTAGAACAAGACAACAAGGGTCTTCCGAGTAAAAAGGGTATCGTTCAGGCCATCGTTGGGCAGGGCTACCATCGCAAGATCATCCTGGCATCACAGTCCACCCAGAACACAATCTACAGtgATGGGCAGTCTGCAGCCATTCCGGTGGCCAGTATGGAGTTTGCAGCGATCTGTCTGAGGAACGGCCTGGTCCTCCTCCCTGATCACCAGCAGCAGGAGAACAAGGCAGAGAACGGCTCCAAGAcaaccagccagtcaggcagCACAGAGAGCGGCTCAGAGAACAGCGACGCCTGCAGTGGGAAAGGTCAAGAAGGAGACAAGTTCCTTTCTGCAGCACCGTCTTCACCTCTGAGGAAACAGGAGGTTGAAAACCTCAGGTGTTCCCTCCTGGCCTGCAGTGCCTACGTGGCCCTGGTGTTAGGAGACAACCTGATGGCCCTGAACCATGCAGAGAAGCTCCTTCACCAGACCAAGCTGTCTGGATCACTCAAgttCCTGGGACACCTGTATGCTGCAGAGGCCCTCATATCCCTGGACCGGATCTCAGAGGCCATCGGTCACCTCAACCCAGAGAACGTCACTGATGTCTCCATGGGGGTGTTGTCTAGCGAGCAGGACCAAGtgtttgtgttcaCAGGGCCAGATAAAGGGGATCTGGAGCCTGTCGAGTCATCAGGGAAGCAGACTCCTCTGTGTTACCCCAGCACAGTGAGCTCAGCCCGGGCCATAATGCTGTTCAACCTGGGCAGTGCCTATTGTCTGAGGAGTGAGTACGAGAAGGCCCGCAAGTGCCTGCATCAGGCCGCCTCCATGGTGAACACCAAGGAGATTCCTCCTGAAGCCATCTTACTGGCTGTCTACCTGGAGCTGCAGAACGggaaCACACAGCTCGCCCTGCAGATCATCAAACGTAACCAGCTCCTCCCCTCAGTGCTCCAGGCGCCCTCTCCAGACACACGAAAGAAGCCTGTTCCCCCCTCCTTCCAGCCTGTCCAACCACCCATCCAGATGCCCTCACCCTTCACAACAGTCCAGCGCAAATGAGCCCTCAACCCTTGTTCCCCTAACCCTCCTTGCCCCATTGCACAGCAACACGCACCTGTCCACCTCTCATCACTTCACCTCAGTGTATTATTTATTTAAGGCAAGCTGACCCCAACTCAGTGccggtgtagggtgaagttgtccctagatgctgatcttgacTCAGCTTTGTATTTCCTCCCACTAATGGTTAACATTGGTGgagaggaagctgatcctagatctgtacctaggggaaattGAACTCCTCAGCACCCAGACGGAGCCCCTCCAGGTCAGGTCCTGGTATGAAATGCAGAGGTCTCCTGTCGGGTGGACGAAGGGTGCGTTCACGGCCCAAATTACACCTTATCCCCTATGtaagtgcactccttttgaccagagccctatggggccctaataaaagtagtgccctatataaggaactgggtaccatttgggatggagCCTTTATTCAGTGGCTATCACCTGCAGTGTCTTTGGGGCAGATCTGACATGATTTCTCTGTTCTCTGAGAGTTTTAACTTTCCATTTGTGACAGCAACATCCGTTATGATATATACTGACCGACTTTTGCTTGGGGCAAATTAAATacctgtataaaaaaataaattttaTTTACAGAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131158 lncRNA upstream 38973 13007683 ~ 13007906 (+) True G114335
TU131153 lncRNA upstream 58250 12988425 ~ 12988629 (+) True G114330
TU131140 lncRNA upstream 77040 12944196 ~ 12969839 (+) False G114320
TU131456 lncRNA downstream 28771 13090077 ~ 13090488 (+) True G114537
TU131481 lncRNA downstream 60618 13121924 ~ 13122191 (+) True G114553
TU131482 lncRNA downstream 62203 13123509 ~ 13123745 (+) True G114554
TU131529 lncRNA downstream 76093 13137399 ~ 13137614 (+) True G114598
TU131534 lncRNA downstream 105058 13166364 ~ 13166592 (+) True G114603
XR_005035129.1 mRNA upstream 119177 12926821 ~ 12927702 (+) True LOC118937726
XM_036938231.1 mRNA upstream 130081 12913631 ~ 12916798 (+) True LOC110525149
XR_005035124.1 mRNA upstream 270047 12716574 ~ 12776832 (+) False spag1b
XM_036938340.1 mRNA downstream 131839 13193145 ~ 13241855 (+) False LOC118936508
XM_036938345.1 mRNA downstream 131842 13193148 ~ 13241855 (+) True LOC118936508
XM_036938407.1 mRNA downstream 263631 13324937 ~ 13329430 (+) False LOC110507612
XM_036938410.1 mRNA downstream 263651 13324957 ~ 13329430 (+) False LOC110507612
XM_036938390.1 mRNA downstream 263655 13324961 ~ 13329430 (+) False LOC110507612
TU131145 other upstream 81949 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 284052 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 325564 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 326186 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1337102 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 560671 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 640304 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 899955 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 1080576 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 1173208 14234514 ~ 14236854 (+) True G115189

Expression Profile