RNA id: XM_036938302.1


Basic Information

Item Value
RNA id XM_036938302.1
length 1647
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110507534
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13086169 ~ 13094428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTACGGTGTTAGTTTCATCTGCTGTTGTTGTACAATATCATACAGAATACAGAAAAAAATGAATTTGGACTGCGTTTAGAAGAGGTGCAATGATTCGCGAGATAATAATTGTAGCTTTCTAACCAGCAGAAGTCACCAGCAGAGGTCATTAAACGTCCATATCAGAGCAATCGATGCTTTAGTGTAGTAGTGCGATTGCTTTTGTCTGTCTGATTGCTGTGCATGGACCACTGGCTGACGTTGGACTCAAAATCTATGTAAAAAATCCCTGCCATACTACCAATTCAGCAATGCAGTCTTTAGAAGGAGAGAATCAACACCTGTGGATGTCACAAGTCATTGATTTGATGGTGTCCAGCTAGAGCTAGCTACAGCTATGTCTGTGGCCTCGCTCCTGCGAAGTGCCATGAGAGTGGTGAACAGACATGTCGCAGCACATTTGGTCCATCAGAGAGCTCTTTCAGGGGCAGATGCTATCAATGCACTGAGACCTTTCTACTTTGCAGTGCACCCAGACTTCTTTGGCCAGCATCCCAGGGAAAGGGAAGTGAATGAAAATTCCCTCAAGAGACTCAATGGTTATTTGGAAAACCTTCAGAAACCGGGGACCCGCTCAGTCCAACCAACAAAGCTCACCTTTTATGTCAGGGAAATAAAGGAGAAGGAAGACATTCAGAAGGACGTCTTTCCTCCTGGGTTCCGTTCGGTCAGCTTCACTCTGCAGACCAAGGATGTCCTGACCACCGTAATGGATGTGTTGAAGTCCTGCAGTCTGTCCACAGAGCACATGAAGGGACTGAAGGCCAGCTCAGAGTCACCCAAGAGCCAGCAGCCAGTGGCTGGGCATGGGAACCCTTTCTACAGGCCCATCAAATGGGACAAAAGCTACTACAGCTTCACTGGCTTCAGAGACCCAGAGCAGGAGCTGAAGCAGGCCAAGAAAGTAGAGCCCACACTAAGCTTGTGGCTGAGAAACCACGAGAAGGAGGCTACGAAGAAGCAGAACGCCAGTGTCCCTCGACGGGAGGAGCTGAAGAGACTCAAGAAGGAATTGTGTCAGAAATTTGCCTTGGAAGATATTAGGTGGCAGCGCAGCTGGGGAGTGACTCACAGATGCTGTCAGCTCCAGAGTCTGAGCCGTCTCTCCCAGCAGAACCCTGAGGCTGTGCTCAACCTGCGAGGACACACTATAATATTCACTGACCAATCAGGGATGAATGCCTCGGGTCATGTGATGCTGGGAACAATGGATGTTCATCACCAATGGACAAAACTGTTTGTGAGTCTCCCCAGCTACCGTAGCCTGCTCCAGCAGACAGAGTGGCTGAAGGAGAGGATCAGCCATGTGTTGGGAGGTATTCAGGTAATTAACGTAGAGAGACTGGGACCTGTACAGCCTATAGAGGAACACTGCAGCATCCTCAACACCTTCCATAAGAGACTACTGGCCCGACGCCTAGCCCTGCATCCCAGGAGCCTGCAAGGTCTGGCCATGACCCTGGAGAAAGAACTTGGAGGGCCAAATGAAATCACCAGCGAGCTGCCTAGAGGGGAACCTGGTGTAGAGGCATGTGAGAGATTCCCTGACCACTGATGATGTACCTGTGGTGTTTTGTCCCAGTGACCGCTCCAGCCCCAGCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131416 lncRNA downstream 94457 12993931 ~ 12994247 (-) True G114514
TU131415 lncRNA downstream 96114 12992298 ~ 12992590 (-) True G114513
TU131413 lncRNA downstream 100075 12988420 ~ 12988629 (-) True G114511
TU131412 lncRNA downstream 100453 12987945 ~ 12988251 (-) True G114510
TU131408 lncRNA downstream 126762 12943485 ~ 12961942 (-) True G114506
TU131706 lncRNA upstream 46965 13140947 ~ 13141231 (-) True G114739
TU131708 lncRNA upstream 57210 13151192 ~ 13153857 (-) True G114741
TU131710 lncRNA upstream 64609 13158591 ~ 13159374 (-) True G114743
TU131714 lncRNA upstream 73759 13167741 ~ 13168196 (-) True G114747
TU131729 lncRNA upstream 106838 13200820 ~ 13201048 (-) True G114759
XM_036938255.1 mRNA downstream 4961 13063090 ~ 13083743 (-) True LOC110507522
XM_036938238.1 mRNA downstream 154170 12924472 ~ 12934534 (-) False pabpc1a
XM_036938245.1 mRNA downstream 154170 12924472 ~ 12934534 (-) True pabpc1a
XR_005039490.1 mRNA downstream 163265 12925357 ~ 12925439 (-) True LOC118944179
XM_036938228.1 mRNA downstream 198308 12813650 ~ 12890396 (-) False LOC110525147
XM_036938313.1 mRNA upstream 3563 13097545 ~ 13127127 (-) False LOC118937728
XM_036938316.1 mRNA upstream 3564 13097546 ~ 13120479 (-) False LOC118937728
XM_036938308.1 mRNA upstream 3564 13097546 ~ 13127125 (-) True LOC118937728
XM_036938328.1 mRNA upstream 82183 13176165 ~ 13188178 (-) False abhd5a
XM_036938337.1 mRNA upstream 82183 13176165 ~ 13188351 (-) False abhd5a
TU131319 other downstream 349547 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 379389 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 475024 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 503564 12584027 ~ 12585140 (-) True G114390
TU130213 other downstream 1430036 11626535 ~ 11658668 (-) True LOC110513475
TU131755 other upstream 201851 13295833 ~ 13323323 (-) True LOC110513400
TU131788 other upstream 236766 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 236766 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 236766 13330748 ~ 13332506 (-) True G114812
TU131917 other upstream 400466 13494448 ~ 13500283 (-) True LOC110534058

Expression Profile